LDB3 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTN2	LDB3	ENSOCUP00000047925	ENSOCUP00000040145	Actinin alpha 2.	LIM domain binding 3.	0.696
ACTN2	MYL1	ENSOCUP00000047925	ENSOCUP00000038248	Actinin alpha 2.	Myosin light chain 1/3, skeletal muscle isoform; Non-regulatory myosin light chain required for proper formation and/or maintenance of myofibers, and thus appropriate muscle function.	0.723
ACTN2	MYOM1	ENSOCUP00000047925	ENSOCUP00000043209	Actinin alpha 2.	Myomesin 1.	0.591
ACTN2	NEBL	ENSOCUP00000047925	ENSOCUP00000041629	Actinin alpha 2.	Nebulette.	0.629
ACTN2	PDLIM1	ENSOCUP00000047925	ENSOCUP00000011732	Actinin alpha 2.	PDZ and LIM domain 1.	0.865
ACTN2	PDLIM3	ENSOCUP00000047925	ENSOCUP00000005033	Actinin alpha 2.	PDZ and LIM domain 3.	0.854
ACTN2	PDLIM5	ENSOCUP00000047925	ENSOCUP00000033005	Actinin alpha 2.	PDZ and LIM domain 5.	0.698
COPG2	LDB3	ENSOCUP00000036778	ENSOCUP00000040145	Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	LIM domain binding 3.	0.648
COPG2	PHTF1	ENSOCUP00000036778	ENSOCUP00000003253	Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Putative homeodomain transcription factor 1.	0.488
LDB3	ACTN2	ENSOCUP00000040145	ENSOCUP00000047925	LIM domain binding 3.	Actinin alpha 2.	0.696
LDB3	COPG2	ENSOCUP00000040145	ENSOCUP00000036778	LIM domain binding 3.	Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.648
LDB3	MYL1	ENSOCUP00000040145	ENSOCUP00000038248	LIM domain binding 3.	Myosin light chain 1/3, skeletal muscle isoform; Non-regulatory myosin light chain required for proper formation and/or maintenance of myofibers, and thus appropriate muscle function.	0.639
LDB3	MYOM1	ENSOCUP00000040145	ENSOCUP00000043209	LIM domain binding 3.	Myomesin 1.	0.791
LDB3	NEBL	ENSOCUP00000040145	ENSOCUP00000041629	LIM domain binding 3.	Nebulette.	0.604
LDB3	PDLIM1	ENSOCUP00000040145	ENSOCUP00000011732	LIM domain binding 3.	PDZ and LIM domain 1.	0.621
LDB3	PDLIM3	ENSOCUP00000040145	ENSOCUP00000005033	LIM domain binding 3.	PDZ and LIM domain 3.	0.650
LDB3	PDLIM5	ENSOCUP00000040145	ENSOCUP00000033005	LIM domain binding 3.	PDZ and LIM domain 5.	0.933
LDB3	PHTF1	ENSOCUP00000040145	ENSOCUP00000003253	LIM domain binding 3.	Putative homeodomain transcription factor 1.	0.762
LDB3	SUOX	ENSOCUP00000040145	ENSOCUP00000000860	LIM domain binding 3.	Sulfite oxidase.	0.732
MYL1	ACTN2	ENSOCUP00000038248	ENSOCUP00000047925	Myosin light chain 1/3, skeletal muscle isoform; Non-regulatory myosin light chain required for proper formation and/or maintenance of myofibers, and thus appropriate muscle function.	Actinin alpha 2.	0.723