STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF5APHD finger protein 5A. (173 aa)    
Predicted Functional Partners:
SF3B3
Splicing factor 3b subunit 3.
   
 0.999
SF3B5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.999
SF3B4
Splicing factor 3b subunit 4.
    
 0.998
SF3B2
Splicing factor 3b subunit 2.
   
 0.997
SF3B6
Splicing factor 3b subunit 6.
   
 0.997
RBMX2
RNA binding motif protein X-linked 2.
    
 
 0.996
DDX46
DEAD-box helicase 46.
   
 0.996
BUD31
BUD31 homolog.
   
 
 0.992
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 
 0.991
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.987
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.