Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGO1 | AGO2 | ENSOCUP00000019687 | ENSOCUP00000030946 | Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] | Protein argonaute-2; Belongs to the argonaute family. | 0.955 |
AGO1 | DDX6 | ENSOCUP00000019687 | ENSOCUP00000005068 | Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] | DEAD-box helicase 6; Belongs to the DEAD box helicase family. | 0.946 |
AGO1 | DHX9 | ENSOCUP00000019687 | ENSOCUP00000029909 | Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] | DExH-box helicase 9. | 0.626 |
AGO1 | DICER1 | ENSOCUP00000019687 | ENSOCUP00000009342 | Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] | Uncharacterized protein. | 0.984 |
AGO1 | MOV10 | ENSOCUP00000019687 | ENSOCUP00000047418 | Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] | Mov10 RISC complex RNA helicase. | 0.903 |
AGO2 | AGO1 | ENSOCUP00000030946 | ENSOCUP00000019687 | Protein argonaute-2; Belongs to the argonaute family. | Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] | 0.955 |
AGO2 | DDX6 | ENSOCUP00000030946 | ENSOCUP00000005068 | Protein argonaute-2; Belongs to the argonaute family. | DEAD-box helicase 6; Belongs to the DEAD box helicase family. | 0.919 |
AGO2 | DHX9 | ENSOCUP00000030946 | ENSOCUP00000029909 | Protein argonaute-2; Belongs to the argonaute family. | DExH-box helicase 9. | 0.853 |
AGO2 | DICER1 | ENSOCUP00000030946 | ENSOCUP00000009342 | Protein argonaute-2; Belongs to the argonaute family. | Uncharacterized protein. | 0.992 |
AGO2 | MOV10 | ENSOCUP00000030946 | ENSOCUP00000047418 | Protein argonaute-2; Belongs to the argonaute family. | Mov10 RISC complex RNA helicase. | 0.882 |
DDX1 | DHX9 | ENSOCUP00000006066 | ENSOCUP00000029909 | DEAD-box helicase 1. | DExH-box helicase 9. | 0.831 |
DDX1 | MOV10 | ENSOCUP00000006066 | ENSOCUP00000047418 | DEAD-box helicase 1. | Mov10 RISC complex RNA helicase. | 0.576 |
DDX1 | RNASEL | ENSOCUP00000006066 | ENSOCUP00000043024 | DEAD-box helicase 1. | Uncharacterized protein. | 0.430 |
DDX10 | DHX9 | ENSOCUP00000003333 | ENSOCUP00000029909 | RNA helicase. | DExH-box helicase 9. | 0.563 |
DDX10 | DICER1 | ENSOCUP00000003333 | ENSOCUP00000009342 | RNA helicase. | Uncharacterized protein. | 0.662 |
DDX10 | MOV10 | ENSOCUP00000003333 | ENSOCUP00000047418 | RNA helicase. | Mov10 RISC complex RNA helicase. | 0.607 |
DDX6 | AGO1 | ENSOCUP00000005068 | ENSOCUP00000019687 | DEAD-box helicase 6; Belongs to the DEAD box helicase family. | Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] | 0.946 |
DDX6 | AGO2 | ENSOCUP00000005068 | ENSOCUP00000030946 | DEAD-box helicase 6; Belongs to the DEAD box helicase family. | Protein argonaute-2; Belongs to the argonaute family. | 0.919 |
DDX6 | DHX9 | ENSOCUP00000005068 | ENSOCUP00000029909 | DEAD-box helicase 6; Belongs to the DEAD box helicase family. | DExH-box helicase 9. | 0.728 |
DDX6 | DICER1 | ENSOCUP00000005068 | ENSOCUP00000009342 | DEAD-box helicase 6; Belongs to the DEAD box helicase family. | Uncharacterized protein. | 0.602 |
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