MEIS1 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MEIS1

Meis homeobox 1. (465 aa)

Predicted Functional Partners:

HOXA9

0.957

PBX1

0.949

HOXA7

0.863

HOXB13

0.859

PBX3

0.853

PBX2

0.804

TSHZ3

0.791

HOXA10

0.774

U3KNY0_RABIT

0.742

HOXC9

0.679

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HOXA10	HOXA7	ENSOCUP00000013035	ENSOCUP00000013045	Homeobox A10.	Homeobox domain-containing protein.	0.720
HOXA10	HOXA9	ENSOCUP00000013035	ENSOCUP00000019782	Homeobox A10.	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.870
HOXA10	MEIS1	ENSOCUP00000013035	ENSOCUP00000048465	Homeobox A10.	Meis homeobox 1.	0.774
HOXA10	PBX1	ENSOCUP00000013035	ENSOCUP00000040408	Homeobox A10.	PBX homeobox 1.	0.633
HOXA10	PBX2	ENSOCUP00000013035	ENSOCUP00000014129	Homeobox A10.	PBX homeobox 2.	0.605
HOXA10	PBX3	ENSOCUP00000013035	ENSOCUP00000010589	Homeobox A10.	PBX homeobox 3.	0.548
HOXA7	HOXA10	ENSOCUP00000013045	ENSOCUP00000013035	Homeobox domain-containing protein.	Homeobox A10.	0.720
HOXA7	HOXA9	ENSOCUP00000013045	ENSOCUP00000019782	Homeobox domain-containing protein.	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.816
HOXA7	HOXC9	ENSOCUP00000013045	ENSOCUP00000020518	Homeobox domain-containing protein.	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.537
HOXA7	MEIS1	ENSOCUP00000013045	ENSOCUP00000048465	Homeobox domain-containing protein.	Meis homeobox 1.	0.863
HOXA7	PBX1	ENSOCUP00000013045	ENSOCUP00000040408	Homeobox domain-containing protein.	PBX homeobox 1.	0.711
HOXA7	PBX2	ENSOCUP00000013045	ENSOCUP00000014129	Homeobox domain-containing protein.	PBX homeobox 2.	0.525
HOXA7	PBX3	ENSOCUP00000013045	ENSOCUP00000010589	Homeobox domain-containing protein.	PBX homeobox 3.	0.656
HOXA7	U3KNY0_RABIT	ENSOCUP00000013045	ENSOCUP00000026940	Homeobox domain-containing protein.	Uncharacterized protein.	0.417
HOXA9	HOXA10	ENSOCUP00000019782	ENSOCUP00000013035	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Homeobox A10.	0.870
HOXA9	HOXA7	ENSOCUP00000019782	ENSOCUP00000013045	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Homeobox domain-containing protein.	0.816
HOXA9	MEIS1	ENSOCUP00000019782	ENSOCUP00000048465	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Meis homeobox 1.	0.957
HOXA9	PBX1	ENSOCUP00000019782	ENSOCUP00000040408	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	PBX homeobox 1.	0.942
HOXA9	PBX2	ENSOCUP00000019782	ENSOCUP00000014129	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	PBX homeobox 2.	0.579
HOXA9	PBX3	ENSOCUP00000019782	ENSOCUP00000010589	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	PBX homeobox 3.	0.816