H3BVQ1_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

H3BVQ1_TETNG

Pentaxin. (221 aa)

Predicted Functional Partners:

H3DCG6_TETNG

0.787

H3CIH9_TETNG

0.781

H3DCH0_TETNG

0.677

H3CAN7_TETNG

0.586

H3CRN2_TETNG

0.517

H3DCH6_TETNG

0.504

H3DCH4_TETNG

0.480

H3CU26_TETNG

0.475

H3DGH8_TETNG

0.471

Q4SNJ7_TETNG

0.470

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3BVQ1_TETNG	H3CAN7_TETNG	ENSTNIP00000000063	ENSTNIP00000005309	Pentaxin.	Ribosome production factor 2 homolog.	0.586
H3BVQ1_TETNG	H3CIH9_TETNG	ENSTNIP00000000063	ENSTNIP00000008057	Pentaxin.	Carbonic anhydrase VI; Belongs to the alpha-carbonic anhydrase family.	0.781
H3BVQ1_TETNG	H3CRN2_TETNG	ENSTNIP00000000063	ENSTNIP00000010916	Pentaxin.	Glutamate-rich WD repeat containing 1.	0.517
H3BVQ1_TETNG	H3CU26_TETNG	ENSTNIP00000000063	ENSTNIP00000011760	Pentaxin.	WD repeat domain 43.	0.475
H3BVQ1_TETNG	H3DCG6_TETNG	ENSTNIP00000000063	ENSTNIP00000018209	Pentaxin.	Carbonic anhydrase VI; Belongs to the alpha-carbonic anhydrase family.	0.787
H3BVQ1_TETNG	H3DCH0_TETNG	ENSTNIP00000000063	ENSTNIP00000018213	Pentaxin.	NOC2-like nucleolar associated transcriptional repressor.	0.677
H3BVQ1_TETNG	H3DCH4_TETNG	ENSTNIP00000000063	ENSTNIP00000018217	Pentaxin.	Hairy-related 9.	0.480
H3BVQ1_TETNG	H3DCH6_TETNG	ENSTNIP00000000063	ENSTNIP00000018219	Pentaxin.	Transmembrane protein 201.	0.504
H3BVQ1_TETNG	H3DGH8_TETNG	ENSTNIP00000000063	ENSTNIP00000019622	Pentaxin.	Ribosomal RNA processing 12 homolog.	0.471
H3BVQ1_TETNG	Q4SNJ7_TETNG	ENSTNIP00000000063	ENSTNIP00000010814	Pentaxin.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.470
H3CAN7_TETNG	H3BVQ1_TETNG	ENSTNIP00000005309	ENSTNIP00000000063	Ribosome production factor 2 homolog.	Pentaxin.	0.586
H3CAN7_TETNG	H3CIH9_TETNG	ENSTNIP00000005309	ENSTNIP00000008057	Ribosome production factor 2 homolog.	Carbonic anhydrase VI; Belongs to the alpha-carbonic anhydrase family.	0.586
H3CAN7_TETNG	H3CRN2_TETNG	ENSTNIP00000005309	ENSTNIP00000010916	Ribosome production factor 2 homolog.	Glutamate-rich WD repeat containing 1.	0.944
H3CAN7_TETNG	H3CU26_TETNG	ENSTNIP00000005309	ENSTNIP00000011760	Ribosome production factor 2 homolog.	WD repeat domain 43.	0.944
H3CAN7_TETNG	H3DCG6_TETNG	ENSTNIP00000005309	ENSTNIP00000018209	Ribosome production factor 2 homolog.	Carbonic anhydrase VI; Belongs to the alpha-carbonic anhydrase family.	0.586
H3CAN7_TETNG	H3DCH0_TETNG	ENSTNIP00000005309	ENSTNIP00000018213	Ribosome production factor 2 homolog.	NOC2-like nucleolar associated transcriptional repressor.	0.992
H3CAN7_TETNG	H3DGH8_TETNG	ENSTNIP00000005309	ENSTNIP00000019622	Ribosome production factor 2 homolog.	Ribosomal RNA processing 12 homolog.	0.959
H3CAN7_TETNG	Q4SNJ7_TETNG	ENSTNIP00000005309	ENSTNIP00000010814	Ribosome production factor 2 homolog.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.994
H3CIH9_TETNG	H3BVQ1_TETNG	ENSTNIP00000008057	ENSTNIP00000000063	Carbonic anhydrase VI; Belongs to the alpha-carbonic anhydrase family.	Pentaxin.	0.781
H3CIH9_TETNG	H3CAN7_TETNG	ENSTNIP00000008057	ENSTNIP00000005309	Carbonic anhydrase VI; Belongs to the alpha-carbonic anhydrase family.	Ribosome production factor 2 homolog.	0.586