H3BVT1_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

H3BVT1_TETNG

Vitellogenin 5. (1706 aa)

Predicted Functional Partners:

H3CLP6_TETNG

0.869

H3D499_TETNG

0.839

H3BVN8_TETNG

0.654

H3D3Z3_TETNG

0.637

H3DA29_TETNG

0.622

H3DJ42_TETNG

0.561

H3DFV8_TETNG

0.559

H3DK01_TETNG

0.559

H3C222_TETNG

0.539

H3D303_TETNG

0.508

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3BVN8_TETNG	H3BVT1_TETNG	ENSTNIP00000000050	ENSTNIP00000000093	Uncharacterized protein.	Vitellogenin 5.	0.654
H3BVN8_TETNG	H3CLP6_TETNG	ENSTNIP00000000050	ENSTNIP00000009175	Uncharacterized protein.	Apolipoprotein A-IV b, tandem duplicate 2.	0.990
H3BVN8_TETNG	H3D499_TETNG	ENSTNIP00000000050	ENSTNIP00000015337	Uncharacterized protein.	Microsomal triglyceride transfer protein.	0.737
H3BVN8_TETNG	H3DA29_TETNG	ENSTNIP00000000050	ENSTNIP00000017370	Uncharacterized protein.	Apolipoprotein A-Ib.	0.905
H3BVT1_TETNG	H3BVN8_TETNG	ENSTNIP00000000093	ENSTNIP00000000050	Vitellogenin 5.	Uncharacterized protein.	0.654
H3BVT1_TETNG	H3C222_TETNG	ENSTNIP00000000093	ENSTNIP00000002290	Vitellogenin 5.	Fatty acid binding protein 1b, tandem duplicate 1.	0.539
H3BVT1_TETNG	H3CLP6_TETNG	ENSTNIP00000000093	ENSTNIP00000009175	Vitellogenin 5.	Apolipoprotein A-IV b, tandem duplicate 2.	0.869
H3BVT1_TETNG	H3D303_TETNG	ENSTNIP00000000093	ENSTNIP00000014891	Vitellogenin 5.	Cytochrome P450, family 1, subfamily A; Belongs to the cytochrome P450 family.	0.508
H3BVT1_TETNG	H3D3Z3_TETNG	ENSTNIP00000000093	ENSTNIP00000015231	Vitellogenin 5.	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues.	0.637
H3BVT1_TETNG	H3D499_TETNG	ENSTNIP00000000093	ENSTNIP00000015337	Vitellogenin 5.	Microsomal triglyceride transfer protein.	0.839
H3BVT1_TETNG	H3DA29_TETNG	ENSTNIP00000000093	ENSTNIP00000017370	Vitellogenin 5.	Apolipoprotein A-Ib.	0.622
H3BVT1_TETNG	H3DFV8_TETNG	ENSTNIP00000000093	ENSTNIP00000019402	Vitellogenin 5.	Intersectin 2a.	0.559
H3BVT1_TETNG	H3DJ42_TETNG	ENSTNIP00000000093	ENSTNIP00000020537	Vitellogenin 5.	Niemann-Pick disease, type C2.	0.561
H3BVT1_TETNG	H3DK01_TETNG	ENSTNIP00000000093	ENSTNIP00000020847	Vitellogenin 5.	Uncharacterized protein.	0.559
H3C222_TETNG	H3BVT1_TETNG	ENSTNIP00000002290	ENSTNIP00000000093	Fatty acid binding protein 1b, tandem duplicate 1.	Vitellogenin 5.	0.539
H3C222_TETNG	H3CLP6_TETNG	ENSTNIP00000002290	ENSTNIP00000009175	Fatty acid binding protein 1b, tandem duplicate 1.	Apolipoprotein A-IV b, tandem duplicate 2.	0.513
H3C222_TETNG	H3D499_TETNG	ENSTNIP00000002290	ENSTNIP00000015337	Fatty acid binding protein 1b, tandem duplicate 1.	Microsomal triglyceride transfer protein.	0.598
H3CLP6_TETNG	H3BVN8_TETNG	ENSTNIP00000009175	ENSTNIP00000000050	Apolipoprotein A-IV b, tandem duplicate 2.	Uncharacterized protein.	0.990
H3CLP6_TETNG	H3BVT1_TETNG	ENSTNIP00000009175	ENSTNIP00000000093	Apolipoprotein A-IV b, tandem duplicate 2.	Vitellogenin 5.	0.869
H3CLP6_TETNG	H3C222_TETNG	ENSTNIP00000009175	ENSTNIP00000002290	Apolipoprotein A-IV b, tandem duplicate 2.	Fatty acid binding protein 1b, tandem duplicate 1.	0.513