STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMNALamin A/C; Belongs to the intermediate filament family. (605 aa)    
Predicted Functional Partners:
BANF1
Barrier to autointegration factor 1.
   
 0.566
Q4SCQ3_TETNG
Chromosome undetermined SCAF2949, whole genome shotgun sequence.
   
 0.566
Q4S2N2_TETNG
Chromosome 17 SCAF14760, whole genome shotgun sequence.
   
 0.566
H3DKY8_TETNG
Caspase 6, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.
   
 0.553
H3CD45_TETNG
SUN domain-containing protein.
    
 0.526
H3DKT7_TETNG
Sad1 and UNC84 domain containing 1.
    
 0.526
H3C0H5_TETNG
Uncharacterized protein.
    
 0.479
Q4SYP2_TETNG
Chromosome undetermined SCAF11997, whole genome shotgun sequence.
    
 0.479
H3CP57_TETNG
Uncharacterized protein.
   
 0.439
H3DC63_TETNG
Si:dkey-21c19.3.
    
 0.439
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.