STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3BYE8_TETNGSi:ch211-107m4.1. (576 aa)    
Predicted Functional Partners:
H3BZN4_TETNG
Heterogeneous nuclear ribonucleoprotein K.
   
 0.617
H3CQ29_TETNG
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.617
H3DDK8_TETNG
Heterogeneous nuclear ribonucleoprotein M.
   
 0.612
H3C1F2_TETNG
Heterogeneous nuclear ribonucleoprotein L.
   
 0.593
HNRNPLL
Heterogeneous nuclear ribonucleoprotein L like.
   
 0.593
Q4SCJ6_TETNG
Chromosome undetermined SCAF14653, whole genome shotgun sequence.
     
 0.566
H3CKN0_TETNG
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 0.544
H3C2H6_TETNG
RRM domain-containing protein.
   
 0.528
HNRNPH1
Heterogeneous nuclear ribonucleoprotein H1.
   
 0.528
HNRNPH3
Heterogeneous nuclear ribonucleoprotein H3.
   
 0.528
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.