H3BYF7_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

H3BYF7_TETNG

Uncharacterized protein. (234 aa)

Predicted Functional Partners:

H3CYC6_TETNG

0.632

Q4RRG6_TETNG

0.554

H3CLJ2_TETNG

0.546

H3DBC3_TETNG

0.509

Q4SSY8_TETNG

0.503

H3DBB2_TETNG

0.471

H3CB03_TETNG

0.442

H3DJU0_TETNG

0.433

H3DND9_TETNG

0.431

H3C0L3_TETNG

0.424

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3BYF7_TETNG	H3C0L3_TETNG	ENSTNIP00000001023	ENSTNIP00000001779	Uncharacterized protein.	Uncharacterized protein.	0.424
H3BYF7_TETNG	H3CB03_TETNG	ENSTNIP00000001023	ENSTNIP00000005425	Uncharacterized protein.	OTU deubiquitinase 5a.	0.442
H3BYF7_TETNG	H3CLJ2_TETNG	ENSTNIP00000001023	ENSTNIP00000009121	Uncharacterized protein.	Exosome component 3.	0.546
H3BYF7_TETNG	H3CYC6_TETNG	ENSTNIP00000001023	ENSTNIP00000013261	Uncharacterized protein.	Neurobeachin-like 1.	0.632
H3BYF7_TETNG	H3DBB2_TETNG	ENSTNIP00000001023	ENSTNIP00000017804	Uncharacterized protein.	Zinc finger, MYND-type containing 10.	0.471
H3BYF7_TETNG	H3DBC3_TETNG	ENSTNIP00000001023	ENSTNIP00000017815	Uncharacterized protein.	Transmembrane protein 51b.	0.509
H3BYF7_TETNG	H3DJU0_TETNG	ENSTNIP00000001023	ENSTNIP00000020786	Uncharacterized protein.	Rab geranylgeranyltransferase subunit alpha.	0.433
H3BYF7_TETNG	H3DND9_TETNG	ENSTNIP00000001023	ENSTNIP00000022038	Uncharacterized protein.	Coiled-coil domain containing 92.	0.431
H3BYF7_TETNG	Q4RRG6_TETNG	ENSTNIP00000001023	ENSTNIP00000019360	Uncharacterized protein.	Chromosome 16 SCAF15002, whole genome shotgun sequence.	0.554
H3BYF7_TETNG	Q4SSY8_TETNG	ENSTNIP00000001023	ENSTNIP00000009665	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.503
H3C0L3_TETNG	H3BYF7_TETNG	ENSTNIP00000001779	ENSTNIP00000001023	Uncharacterized protein.	Uncharacterized protein.	0.424
H3C0L3_TETNG	H3CYC6_TETNG	ENSTNIP00000001779	ENSTNIP00000013261	Uncharacterized protein.	Neurobeachin-like 1.	0.424
H3C0L3_TETNG	Q4SSY8_TETNG	ENSTNIP00000001779	ENSTNIP00000009665	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.543
H3CB03_TETNG	H3BYF7_TETNG	ENSTNIP00000005425	ENSTNIP00000001023	OTU deubiquitinase 5a.	Uncharacterized protein.	0.442
H3CB03_TETNG	H3CYC6_TETNG	ENSTNIP00000005425	ENSTNIP00000013261	OTU deubiquitinase 5a.	Neurobeachin-like 1.	0.442
H3CB03_TETNG	H3DND9_TETNG	ENSTNIP00000005425	ENSTNIP00000022038	OTU deubiquitinase 5a.	Coiled-coil domain containing 92.	0.541
H3CLJ2_TETNG	H3BYF7_TETNG	ENSTNIP00000009121	ENSTNIP00000001023	Exosome component 3.	Uncharacterized protein.	0.546
H3CLJ2_TETNG	H3CYC6_TETNG	ENSTNIP00000009121	ENSTNIP00000013261	Exosome component 3.	Neurobeachin-like 1.	0.546
H3CYC6_TETNG	H3BYF7_TETNG	ENSTNIP00000013261	ENSTNIP00000001023	Neurobeachin-like 1.	Uncharacterized protein.	0.632
H3CYC6_TETNG	H3C0L3_TETNG	ENSTNIP00000013261	ENSTNIP00000001779	Neurobeachin-like 1.	Uncharacterized protein.	0.424