H3BYI6_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

H3BYI6_TETNG

Reverse transcriptase domain-containing protein. (1112 aa)

Predicted Functional Partners:

H3CY97_TETNG

0.970

H3CXU5_TETNG

0.965

H3DN55_TETNG

0.963

H3CY12_TETNG

0.945

H3DG93_TETNG

0.937

Q4RGY9_TETNG

0.891

H3C8W0_TETNG

0.831

H3CCR0_TETNG

0.831

Q4SF14_TETNG

0.788

H3CE84_TETNG

0.776

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3BYI6_TETNG	H3C8W0_TETNG	ENSTNIP00000001052	ENSTNIP00000004682	Reverse transcriptase domain-containing protein.	Uncharacterized protein.	0.831
H3BYI6_TETNG	H3CCR0_TETNG	ENSTNIP00000001052	ENSTNIP00000006033	Reverse transcriptase domain-containing protein.	PAX interacting (with transcription-activation domain) protein 1.	0.831
H3BYI6_TETNG	H3CE84_TETNG	ENSTNIP00000001052	ENSTNIP00000006558	Reverse transcriptase domain-containing protein.	Tumor protein p53 binding protein, 1.	0.776
H3BYI6_TETNG	H3CXU5_TETNG	ENSTNIP00000001052	ENSTNIP00000013080	Reverse transcriptase domain-containing protein.	BRISC and BRCA1 A complex member 1.	0.965
H3BYI6_TETNG	H3CY12_TETNG	ENSTNIP00000001052	ENSTNIP00000013147	Reverse transcriptase domain-containing protein.	Uncharacterized protein.	0.945
H3BYI6_TETNG	H3CY97_TETNG	ENSTNIP00000001052	ENSTNIP00000013232	Reverse transcriptase domain-containing protein.	BRCA1/BRCA2-containing complex, subunit 3.	0.970
H3BYI6_TETNG	H3DG93_TETNG	ENSTNIP00000001052	ENSTNIP00000019537	Reverse transcriptase domain-containing protein.	BRCA1 associated RING domain 1.	0.937
H3BYI6_TETNG	H3DN55_TETNG	ENSTNIP00000001052	ENSTNIP00000021954	Reverse transcriptase domain-containing protein.	BRISC and BRCA1 A complex member 2.	0.963
H3BYI6_TETNG	Q4RGY9_TETNG	ENSTNIP00000001052	ENSTNIP00000021867	Reverse transcriptase domain-containing protein.	Chromosome undetermined SCAF15083, whole genome shotgun sequence.	0.891
H3BYI6_TETNG	Q4SF14_TETNG	ENSTNIP00000001052	ENSTNIP00000013085	Reverse transcriptase domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.788
H3C8W0_TETNG	H3BYI6_TETNG	ENSTNIP00000004682	ENSTNIP00000001052	Uncharacterized protein.	Reverse transcriptase domain-containing protein.	0.831
H3C8W0_TETNG	H3CE84_TETNG	ENSTNIP00000004682	ENSTNIP00000006558	Uncharacterized protein.	Tumor protein p53 binding protein, 1.	0.962
H3C8W0_TETNG	H3CXU5_TETNG	ENSTNIP00000004682	ENSTNIP00000013080	Uncharacterized protein.	BRISC and BRCA1 A complex member 1.	0.731
H3C8W0_TETNG	H3CY12_TETNG	ENSTNIP00000004682	ENSTNIP00000013147	Uncharacterized protein.	Uncharacterized protein.	0.947
H3C8W0_TETNG	H3CY97_TETNG	ENSTNIP00000004682	ENSTNIP00000013232	Uncharacterized protein.	BRCA1/BRCA2-containing complex, subunit 3.	0.785
H3C8W0_TETNG	H3DG93_TETNG	ENSTNIP00000004682	ENSTNIP00000019537	Uncharacterized protein.	BRCA1 associated RING domain 1.	0.891
H3C8W0_TETNG	H3DN55_TETNG	ENSTNIP00000004682	ENSTNIP00000021954	Uncharacterized protein.	BRISC and BRCA1 A complex member 2.	0.704
H3C8W0_TETNG	Q4RGY9_TETNG	ENSTNIP00000004682	ENSTNIP00000021867	Uncharacterized protein.	Chromosome undetermined SCAF15083, whole genome shotgun sequence.	0.480
H3C8W0_TETNG	Q4SF14_TETNG	ENSTNIP00000004682	ENSTNIP00000013085	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.445
H3CCR0_TETNG	H3BYI6_TETNG	ENSTNIP00000006033	ENSTNIP00000001052	PAX interacting (with transcription-activation domain) protein 1.	Reverse transcriptase domain-containing protein.	0.831