Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
H3BYS0_TETNGUbiquitinyl hydrolase 1. (875 aa)    
Predicted Functional Partners:
Q4SF14_TETNG
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.919
Q4RGY9_TETNG
Chromosome undetermined SCAF15083, whole genome shotgun sequence.
    
 0.919
Q4SW32_TETNG
Chromosome undetermined SCAF13692, whole genome shotgun sequence.
    
 
 0.774
H3CTD9_TETNG
Zinc finger, AN1-type domain 4.
    
 0.745
H3CVC6_TETNG
Ubiquitin carboxyl-terminal hydrolase.
     
 0.723
H3DER6_TETNG
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.712
H3D075_TETNG
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.675
H3DEM0_TETNG
ISG15 ubiquitin like modifier.
    
 0.675
H3DR83_TETNG
Uncharacterized protein.
    
 0.675
H3D231_TETNG
Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family.
   
 
 0.666
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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