Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3BYV7_TETNGZgc:162297. (118 aa)    
Predicted Functional Partners:
H3CLD4_TETNG
LTV1 ribosome biogenesis factor.
    
 0.717
H3DD75_TETNG
RIO kinase 2 (yeast).
   
 0.712
H3DAY4_TETNG
Bystin-like.
    
 0.706
H3BX07_TETNG
TSR1 ribosome maturation factor.
    
 0.702
H3CA31_TETNG
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
    
 0.674
RPS3
KH type-2 domain-containing protein.
    
 0.627
H3DKX6_TETNG
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 0.581
H3CLL9_TETNG
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
    
  0.578
H3D075_TETNG
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.566
RPS20
Ribosomal protein S20.
    
 0.535
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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