Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3BYV8_TETNGCollagen, type II, alpha 1b. (973 aa)    
Predicted Functional Partners:
H3CNN3_TETNG
Sp7 transcription factor.
    
 0.451
H3CR51_TETNG
Collagen, type VI, alpha 1.
  
0.451
H3CNV3_TETNG
Metalloendopeptidase.
    
 0.447
H3CZR0_TETNG
Metalloendopeptidase.
    
 0.447
H3CC98_TETNG
Matrix metallopeptidase 13a.
    
 0.415
H3D882_TETNG
ALX homeobox 1.
      
 0.414
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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