H3BZ08_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

H3BZ08_TETNG

Syntaxin binding protein 5b (tomosyn). (1150 aa)

Predicted Functional Partners:

Q4RUU4_TETNG

0.896

H3DMU8_TETNG

0.896

H3CWH5_TETNG

0.876

H3D2Z4_TETNG

0.876

H3CBX7_TETNG

0.804

H3D054_TETNG

0.775

H3D3Z0_TETNG

0.753

H3DPQ5_TETNG

0.753

H3C9B1_TETNG

0.751

STX3

0.751

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3BZ08_TETNG	H3C9B1_TETNG	ENSTNIP00000001224	ENSTNIP00000004833	Syntaxin binding protein 5b (tomosyn).	Syntaxin 1B; Belongs to the syntaxin family.	0.751
H3BZ08_TETNG	H3CBX7_TETNG	ENSTNIP00000001224	ENSTNIP00000005749	Syntaxin binding protein 5b (tomosyn).	Syntaxin 12; Belongs to the syntaxin family.	0.804
H3BZ08_TETNG	H3CWH5_TETNG	ENSTNIP00000001224	ENSTNIP00000012609	Syntaxin binding protein 5b (tomosyn).	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.876
H3BZ08_TETNG	H3D054_TETNG	ENSTNIP00000001224	ENSTNIP00000013890	Syntaxin binding protein 5b (tomosyn).	Syntaxin 7-like; Belongs to the syntaxin family.	0.775
H3BZ08_TETNG	H3D2Z4_TETNG	ENSTNIP00000001224	ENSTNIP00000014882	Syntaxin binding protein 5b (tomosyn).	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.876
H3BZ08_TETNG	H3D3Z0_TETNG	ENSTNIP00000001224	ENSTNIP00000015228	Syntaxin binding protein 5b (tomosyn).	t-SNARE coiled-coil homology domain-containing protein.	0.753
H3BZ08_TETNG	H3DMU8_TETNG	ENSTNIP00000001224	ENSTNIP00000021846	Syntaxin binding protein 5b (tomosyn).	Vesicle transport through interaction with t-SNAREs 1B.	0.896
H3BZ08_TETNG	H3DPQ5_TETNG	ENSTNIP00000001224	ENSTNIP00000022504	Syntaxin binding protein 5b (tomosyn).	t-SNARE coiled-coil homology domain-containing protein.	0.753
H3BZ08_TETNG	Q4RUU4_TETNG	ENSTNIP00000001224	ENSTNIP00000018458	Syntaxin binding protein 5b (tomosyn).	Chromosome 12 SCAF14993, whole genome shotgun sequence.	0.896
H3BZ08_TETNG	STX3	ENSTNIP00000001224	ENSTNIP00000005822	Syntaxin binding protein 5b (tomosyn).	Syntaxin 3; Belongs to the syntaxin family.	0.751
H3C9B1_TETNG	H3BZ08_TETNG	ENSTNIP00000004833	ENSTNIP00000001224	Syntaxin 1B; Belongs to the syntaxin family.	Syntaxin binding protein 5b (tomosyn).	0.751
H3C9B1_TETNG	H3CBX7_TETNG	ENSTNIP00000004833	ENSTNIP00000005749	Syntaxin 1B; Belongs to the syntaxin family.	Syntaxin 12; Belongs to the syntaxin family.	0.755
H3C9B1_TETNG	H3CWH5_TETNG	ENSTNIP00000004833	ENSTNIP00000012609	Syntaxin 1B; Belongs to the syntaxin family.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.931
H3C9B1_TETNG	H3D054_TETNG	ENSTNIP00000004833	ENSTNIP00000013890	Syntaxin 1B; Belongs to the syntaxin family.	Syntaxin 7-like; Belongs to the syntaxin family.	0.755
H3C9B1_TETNG	H3D2Z4_TETNG	ENSTNIP00000004833	ENSTNIP00000014882	Syntaxin 1B; Belongs to the syntaxin family.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.931
H3C9B1_TETNG	H3D3Z0_TETNG	ENSTNIP00000004833	ENSTNIP00000015228	Syntaxin 1B; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein.	0.540
H3C9B1_TETNG	H3DMU8_TETNG	ENSTNIP00000004833	ENSTNIP00000021846	Syntaxin 1B; Belongs to the syntaxin family.	Vesicle transport through interaction with t-SNAREs 1B.	0.761
H3C9B1_TETNG	H3DPQ5_TETNG	ENSTNIP00000004833	ENSTNIP00000022504	Syntaxin 1B; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein.	0.540
H3C9B1_TETNG	Q4RUU4_TETNG	ENSTNIP00000004833	ENSTNIP00000018458	Syntaxin 1B; Belongs to the syntaxin family.	Chromosome 12 SCAF14993, whole genome shotgun sequence.	0.893
H3C9B1_TETNG	STX3	ENSTNIP00000004833	ENSTNIP00000005822	Syntaxin 1B; Belongs to the syntaxin family.	Syntaxin 3; Belongs to the syntaxin family.	0.548