H3BZC5_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

H3BZC5_TETNG

FERM domain-containing protein. (405 aa)

Predicted Functional Partners:

H3CY80_TETNG

0.886

H3DGK0_TETNG

0.886

H3CHP1_TETNG

0.836

H3D1V2_TETNG

0.744

H3CVR4_TETNG

0.699

H3C049_TETNG

0.683

H3CML1_TETNG

0.683

H3C470_TETNG

0.681

H3C0I8_TETNG

0.671

H3CN97_TETNG

0.671

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3BZC5_TETNG	H3C049_TETNG	ENSTNIP00000001341	ENSTNIP00000001615	FERM domain-containing protein.	Uncharacterized protein.	0.683
H3BZC5_TETNG	H3C0I8_TETNG	ENSTNIP00000001341	ENSTNIP00000001754	FERM domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.671
H3BZC5_TETNG	H3C470_TETNG	ENSTNIP00000001341	ENSTNIP00000003039	FERM domain-containing protein.	Integrin beta.	0.681
H3BZC5_TETNG	H3CHP1_TETNG	ENSTNIP00000001341	ENSTNIP00000007769	FERM domain-containing protein.	Talin 1.	0.836
H3BZC5_TETNG	H3CML1_TETNG	ENSTNIP00000001341	ENSTNIP00000009492	FERM domain-containing protein.	Integrin beta.	0.683
H3BZC5_TETNG	H3CN97_TETNG	ENSTNIP00000001341	ENSTNIP00000009728	FERM domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.671
H3BZC5_TETNG	H3CVR4_TETNG	ENSTNIP00000001341	ENSTNIP00000012348	FERM domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.699
H3BZC5_TETNG	H3CY80_TETNG	ENSTNIP00000001341	ENSTNIP00000013215	FERM domain-containing protein.	Vinculin b.	0.886
H3BZC5_TETNG	H3D1V2_TETNG	ENSTNIP00000001341	ENSTNIP00000014490	FERM domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.744
H3BZC5_TETNG	H3DGK0_TETNG	ENSTNIP00000001341	ENSTNIP00000019644	FERM domain-containing protein.	Vinculin a.	0.886
H3C049_TETNG	H3BZC5_TETNG	ENSTNIP00000001615	ENSTNIP00000001341	Uncharacterized protein.	FERM domain-containing protein.	0.683
H3C049_TETNG	H3C0I8_TETNG	ENSTNIP00000001615	ENSTNIP00000001754	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.660
H3C049_TETNG	H3C470_TETNG	ENSTNIP00000001615	ENSTNIP00000003039	Uncharacterized protein.	Integrin beta.	0.746
H3C049_TETNG	H3CHP1_TETNG	ENSTNIP00000001615	ENSTNIP00000007769	Uncharacterized protein.	Talin 1.	0.683
H3C049_TETNG	H3CML1_TETNG	ENSTNIP00000001615	ENSTNIP00000009492	Uncharacterized protein.	Integrin beta.	0.543
H3C049_TETNG	H3CN97_TETNG	ENSTNIP00000001615	ENSTNIP00000009728	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.650
H3C049_TETNG	H3CVR4_TETNG	ENSTNIP00000001615	ENSTNIP00000012348	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.745
H3C049_TETNG	H3CY80_TETNG	ENSTNIP00000001615	ENSTNIP00000013215	Uncharacterized protein.	Vinculin b.	0.585
H3C049_TETNG	H3D1V2_TETNG	ENSTNIP00000001615	ENSTNIP00000014490	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.650
H3C049_TETNG	H3DGK0_TETNG	ENSTNIP00000001615	ENSTNIP00000019644	Uncharacterized protein.	Vinculin a.	0.585