STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3BZF1_TETNGSi:dkey-222n6.2; Belongs to the intermediate filament family. (383 aa)    
Predicted Functional Partners:
H3D6D1_TETNG
BCL2 associated athanogene 3.
    
 0.683
Q4SF14_TETNG
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.498
H3D789_TETNG
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.
    
 
 0.465
H3CRX2_TETNG
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.456
H3DGN0_TETNG
BCL2 associated athanogene 2.
    
 
 0.456
Q4RGY9_TETNG
Chromosome undetermined SCAF15083, whole genome shotgun sequence.
    
  0.440
H3BZB7_TETNG
RUNX family transcription factor 1.
    
  0.418
H3C2K3_TETNG
Runt-related transcription factor.
    
  0.418
Q8AY99_TETNG
Runt-related transcription factor.
    
  0.418
H3CWW0_TETNG
Runt domain-containing protein.
    
  0.418
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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