Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3C3I7_TETNGCollagen, type I, alpha 2. (1356 aa)    
Predicted Functional Partners:
SDC4
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
  0.901
H3C0I8_TETNG
Integrin beta; Belongs to the integrin beta chain family.
    
 0.723
H3CN97_TETNG
Integrin beta; Belongs to the integrin beta chain family.
    
 0.723
H3D1V2_TETNG
Integrin beta; Belongs to the integrin beta chain family.
    
 0.723
H3DQB1_TETNG
Integrin, alpha 10; Belongs to the integrin alpha chain family.
    
 0.716
H3CRB1_TETNG
Integrin beta; Belongs to the integrin beta chain family.
    
 0.708
H3CTI5_TETNG
Integrin beta; Belongs to the integrin beta chain family.
    
 0.708
H3C470_TETNG
Integrin beta.
    
 0.706
H3C6N6_TETNG
Integrin, alpha 8; Belongs to the integrin alpha chain family.
    
 0.706
H3CFJ4_TETNG
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.706
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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