Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
H3BZJ7_TETNGSplicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)    
Predicted Functional Partners:
H3CUT3_TETNG
Splicing factor 3b, subunit 4.
   
 0.999
H3DR39_TETNG
Splicing factor 3b, subunit 1.
    
 0.999
H3CPR4_TETNG
Splicing factor 3b, subunit 2.
    
 0.998
H3D5X9_TETNG
PHD finger protein 5A.
   
 0.998
Q4SGV0_TETNG
Chromosome 14 SCAF14590, whole genome shotgun sequence.
   
 0.997
H3DCY8_TETNG
Splicing factor 3a, subunit 2.
   
 0.996
Q4T029_TETNG
Small nuclear ribonucleoprotein Sm D3.
   
 0.995
H3D2E9_TETNG
Small nuclear ribonucleoprotein Sm D2.
   
 0.995
H3C896_TETNG
Splicing factor 3a, subunit 1.
    
 0.994
Q4T891_TETNG
Small nuclear ribonucleoprotein G.
   
  0.994
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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