Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
H3BZT6_TETNGHelicase with zinc finger. (1913 aa)    
Predicted Functional Partners:
H3CH79_TETNG
Ring finger and CCCH-type domains 2.
   
 
 0.927
H3DCT5_TETNG
Ring finger and CCCH-type domains 1b.
   
 
 0.816
H3C4Z6_TETNG
SET and MYND domain containing 3.
    
 
 0.809
H3DJZ5_TETNG
SET and MYND domain containing 2a.
    
 
 0.792
Q4SDS8_TETNG
Chromosome 1 SCAF14632, whole genome shotgun sequence.
    
 
 0.751
H3CHY8_TETNG
Uncharacterized protein.
    
 
 0.737
H3DMY7_TETNG
CCR4-NOT transcription complex, subunit 1.
   
 
 0.729
H3DNN1_TETNG
LsmAD domain-containing protein.
   
 
 0.720
PAN3
PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...]
   
   0.689
H3CHT1_TETNG
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
      
 0.674
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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