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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3BZW3_TETNGUncharacterized protein. (330 aa)    
Predicted Functional Partners:
H3CTS0_TETNG
Heat shock factor binding protein 1a.
      
 0.595
BFAR
Bifunctional apoptosis regulator.
      
 0.563
H3CL70_TETNG
Uncharacterized protein.
      
 0.562
H3CM22_TETNG
PAXIP1 associated glutamate-rich protein 1.
      
 0.562
H3DI15_TETNG
Coiled-coil domain containing 6a.
      
 0.554
H3CXX5_TETNG
RRN3 homolog, RNA polymerase I transcription factor.
      
 0.553
H3D0Q2_TETNG
Calcium regulated heat stable protein 1.
      
 0.542
CIAO1
Probable cytosolic iron-sulfur protein assembly protein CIAO1; Key component of the cytosolic iron-sulfur protein assembly (CIA) complex, a multiprotein complex that mediates the incorporation of iron-sulfur cluster into extramitochondrial Fe/S proteins. Belongs to the WD repeat CIA1 family.
      
 0.506
H3CS48_TETNG
Poly(A)-specific ribonuclease (deadenylation nuclease).
      
 0.497
Q4SKC9_TETNG
Chromosome 13 SCAF14566, whole genome shotgun sequence.
      
 0.483
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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