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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3BZX7_TETNGSelenoprotein J. (281 aa)    
Predicted Functional Partners:
H3CQF1_TETNG
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.880
H3CJG5_TETNG
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.878
H3CNR2_TETNG
Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.
    
 0.871
H3D363_TETNG
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 0.862
H3CWV9_TETNG
SPT3 homolog, SAGA and STAGA complex component.
    
 0.849
H3DC60_TETNG
Nuclear receptor subfamily 1, group D, member 4a.
    
 0.825
Q4SVI5_TETNG
TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.
   
 0.694
H3D3G2_TETNG
TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.694
H3C813_TETNG
SAGA complex associated factor 29.
    
 0.686
SGF29
SAGA complex associated factor 29.
    
 0.686
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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