SAMD13 protein (Tetraodon nigroviridis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SAMD13

Sterile alpha motif domain containing 13. (122 aa)

Predicted Functional Partners:

H3CG56_TETNG

0.754

Q4RXV2_TETNG

0.740

H3DDK9_TETNG

0.701

H3DLL2_TETNG

0.662

H3D5S9_TETNG

0.658

H3D5T0_TETNG

0.658

H3CFQ7_TETNG

0.651

H3CA73_TETNG

0.644

H3DGW8_TETNG

0.644

H3DDM5_TETNG

0.631

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3CA73_TETNG	H3CG56_TETNG	ENSTNIP00000005145	ENSTNIP00000007233	AT rich interactive domain 4A (RBP1-like).	MYST/Esa1-associated factor 6.	0.804
H3CA73_TETNG	H3D5S9_TETNG	ENSTNIP00000005145	ENSTNIP00000015869	AT rich interactive domain 4A (RBP1-like).	Uncharacterized protein.	0.894
H3CA73_TETNG	H3D5T0_TETNG	ENSTNIP00000005145	ENSTNIP00000015870	AT rich interactive domain 4A (RBP1-like).	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.894
H3CA73_TETNG	H3DDK9_TETNG	ENSTNIP00000005145	ENSTNIP00000018602	AT rich interactive domain 4A (RBP1-like).	DNA methyltransferase 1 associated protein 1.	0.897
H3CA73_TETNG	H3DDM5_TETNG	ENSTNIP00000005145	ENSTNIP00000018618	AT rich interactive domain 4A (RBP1-like).	Actin-like 6A; Belongs to the actin family.	0.966
H3CA73_TETNG	H3DGW8_TETNG	ENSTNIP00000005145	ENSTNIP00000019762	AT rich interactive domain 4A (RBP1-like).	Translocase of outer mitochondrial membrane 20.	0.812
H3CA73_TETNG	Q4RXV2_TETNG	ENSTNIP00000005145	ENSTNIP00000017629	AT rich interactive domain 4A (RBP1-like).	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.786
H3CA73_TETNG	SAMD13	ENSTNIP00000005145	ENSTNIP00000001608	AT rich interactive domain 4A (RBP1-like).	Sterile alpha motif domain containing 13.	0.644
H3CFQ7_TETNG	H3D5S9_TETNG	ENSTNIP00000007084	ENSTNIP00000015869	KAT8 regulatory NSL complex subunit 2.	Uncharacterized protein.	0.587
H3CFQ7_TETNG	H3D5T0_TETNG	ENSTNIP00000007084	ENSTNIP00000015870	KAT8 regulatory NSL complex subunit 2.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.587
H3CFQ7_TETNG	H3DDK9_TETNG	ENSTNIP00000007084	ENSTNIP00000018602	KAT8 regulatory NSL complex subunit 2.	DNA methyltransferase 1 associated protein 1.	0.580
H3CFQ7_TETNG	H3DLL2_TETNG	ENSTNIP00000007084	ENSTNIP00000021410	KAT8 regulatory NSL complex subunit 2.	Microspherule protein 1.	0.999
H3CFQ7_TETNG	SAMD13	ENSTNIP00000007084	ENSTNIP00000001608	KAT8 regulatory NSL complex subunit 2.	Sterile alpha motif domain containing 13.	0.651
H3CG56_TETNG	H3CA73_TETNG	ENSTNIP00000007233	ENSTNIP00000005145	MYST/Esa1-associated factor 6.	AT rich interactive domain 4A (RBP1-like).	0.804
H3CG56_TETNG	H3D5S9_TETNG	ENSTNIP00000007233	ENSTNIP00000015869	MYST/Esa1-associated factor 6.	Uncharacterized protein.	0.977
H3CG56_TETNG	H3D5T0_TETNG	ENSTNIP00000007233	ENSTNIP00000015870	MYST/Esa1-associated factor 6.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.977
H3CG56_TETNG	H3DDK9_TETNG	ENSTNIP00000007233	ENSTNIP00000018602	MYST/Esa1-associated factor 6.	DNA methyltransferase 1 associated protein 1.	0.992
H3CG56_TETNG	H3DDM5_TETNG	ENSTNIP00000007233	ENSTNIP00000018618	MYST/Esa1-associated factor 6.	Actin-like 6A; Belongs to the actin family.	0.967
H3CG56_TETNG	H3DGW8_TETNG	ENSTNIP00000007233	ENSTNIP00000019762	MYST/Esa1-associated factor 6.	Translocase of outer mitochondrial membrane 20.	0.804
H3CG56_TETNG	Q4RXV2_TETNG	ENSTNIP00000007233	ENSTNIP00000017629	MYST/Esa1-associated factor 6.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.977