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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3C0A6_TETNGFormin binding protein 1b. (623 aa)    
Predicted Functional Partners:
H3DFV8_TETNG
Intersectin 2a.
   
 0.775
H3DK01_TETNG
Uncharacterized protein.
   
 0.775
H3C605_TETNG
Uncharacterized protein.
   
 0.665
H3CYI1_TETNG
WASP like actin nucleation promoting factor a.
   
 0.665
H3DMB2_TETNG
WASP like actin nucleation promoting factor b.
   
 0.665
H3C102_TETNG
Intersectin 1 (SH3 domain protein).
   
 0.655
H3CPX5_TETNG
Ubiquitin carboxyl-terminal hydrolase.
      
 0.647
H3CI20_TETNG
tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]
    
   0.643
Q4SQY7_TETNG
Chromosome 11 SCAF14528, whole genome shotgun sequence.
    
 0.578
H3D4S9_TETNG
Uncharacterized protein.
    
 0.578
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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