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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANKRD50Ankyrin repeat domain 50. (563 aa)    
Predicted Functional Partners:
H3D6A8_TETNG
Uncharacterized protein.
 
      0.900
H3D696_TETNG
Polycomb group ring finger 1.
    
 0.619
H3CKP4_TETNG
AUP1 lipid droplet regulating VLDL assembly factor.
    
 
 0.614
H3CBT7_TETNG
Serine/threonine-protein phosphatase.
    
 0.611
H3D6A0_TETNG
Adenosine deaminase domain containing 1 (testis-specific).
      
 0.579
H3D4C5_TETNG
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.565
FAT4
FAT atypical cadherin 4.
    
 0.551
H3D6A4_TETNG
Nudix (nucleoside diphosphate linked moiety X)-type motif 6.
      
 0.515
H3CU91_TETNG
Centrin, EF-hand protein, 2.
    
 0.511
H3D6A2_TETNG
Bardet-Biedl syndrome 12.
      
 0.511
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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