H3C0W4_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

H3C0W4_TETNG

Uncharacterized protein. (1305 aa)

Predicted Functional Partners:

CNTN1

0.944

H3CRM9_TETNG

0.900

H3CKT9_TETNG

0.645

H3CTI6_TETNG

0.597

H3CVW0_TETNG

0.508

H3CG22_TETNG

0.504

H3CI87_TETNG

0.502

H3CIC6_TETNG

0.502

H3DA91_TETNG

0.502

H3DEI8_TETNG

0.502

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNTN1	H3C0W4_TETNG	ENSTNIP00000019080	ENSTNIP00000001880	Contactin 1.	Uncharacterized protein.	0.944
CNTN1	H3CRM9_TETNG	ENSTNIP00000019080	ENSTNIP00000010913	Contactin 1.	RNA binding fox-1 homolog 1, like.	0.900
CNTN1	H3CTI6_TETNG	ENSTNIP00000019080	ENSTNIP00000011570	Contactin 1.	Neuropilin; Belongs to the neuropilin family.	0.436
H3C0W4_TETNG	CNTN1	ENSTNIP00000001880	ENSTNIP00000019080	Uncharacterized protein.	Contactin 1.	0.944
H3C0W4_TETNG	H3CG22_TETNG	ENSTNIP00000001880	ENSTNIP00000007199	Uncharacterized protein.	Family with sequence similarity 151 member B.	0.504
H3C0W4_TETNG	H3CI87_TETNG	ENSTNIP00000001880	ENSTNIP00000007965	Uncharacterized protein.	Uncharacterized protein.	0.502
H3C0W4_TETNG	H3CIC6_TETNG	ENSTNIP00000001880	ENSTNIP00000008004	Uncharacterized protein.	Ankyrin 1, erythrocytic b.	0.502
H3C0W4_TETNG	H3CKT9_TETNG	ENSTNIP00000001880	ENSTNIP00000008868	Uncharacterized protein.	Contactin 2.	0.645
H3C0W4_TETNG	H3CRM9_TETNG	ENSTNIP00000001880	ENSTNIP00000010913	Uncharacterized protein.	RNA binding fox-1 homolog 1, like.	0.900
H3C0W4_TETNG	H3CTI6_TETNG	ENSTNIP00000001880	ENSTNIP00000011570	Uncharacterized protein.	Neuropilin; Belongs to the neuropilin family.	0.597
H3C0W4_TETNG	H3CVW0_TETNG	ENSTNIP00000001880	ENSTNIP00000012394	Uncharacterized protein.	Gliomedin.	0.508
H3C0W4_TETNG	H3DA91_TETNG	ENSTNIP00000001880	ENSTNIP00000017432	Uncharacterized protein.	Uncharacterized protein.	0.502
H3C0W4_TETNG	H3DEI8_TETNG	ENSTNIP00000001880	ENSTNIP00000018931	Uncharacterized protein.	Ankyrin 1, erythrocytic a.	0.502
H3CG22_TETNG	H3C0W4_TETNG	ENSTNIP00000007199	ENSTNIP00000001880	Family with sequence similarity 151 member B.	Uncharacterized protein.	0.504
H3CI87_TETNG	H3C0W4_TETNG	ENSTNIP00000007965	ENSTNIP00000001880	Uncharacterized protein.	Uncharacterized protein.	0.502
H3CIC6_TETNG	H3C0W4_TETNG	ENSTNIP00000008004	ENSTNIP00000001880	Ankyrin 1, erythrocytic b.	Uncharacterized protein.	0.502
H3CKT9_TETNG	H3C0W4_TETNG	ENSTNIP00000008868	ENSTNIP00000001880	Contactin 2.	Uncharacterized protein.	0.645
H3CKT9_TETNG	H3CTI6_TETNG	ENSTNIP00000008868	ENSTNIP00000011570	Contactin 2.	Neuropilin; Belongs to the neuropilin family.	0.533
H3CRM9_TETNG	CNTN1	ENSTNIP00000010913	ENSTNIP00000019080	RNA binding fox-1 homolog 1, like.	Contactin 1.	0.900
H3CRM9_TETNG	H3C0W4_TETNG	ENSTNIP00000010913	ENSTNIP00000001880	RNA binding fox-1 homolog 1, like.	Uncharacterized protein.	0.900