STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3C0X3_TETNGATP-binding cassette, sub-family A (ABC1), member 1A. (2269 aa)    
Predicted Functional Partners:
H3CW30_TETNG
Nuclear receptor subfamily 1, group H, member 3.
    
 0.617
H3CLP6_TETNG
Apolipoprotein A-IV b, tandem duplicate 2.
   
 0.595
H3CQV0_TETNG
Receptor protein-tyrosine kinase.
   
 
 0.592
H3CU98_TETNG
Uncharacterized protein.
      
 0.592
H3D904_TETNG
RAB11 family interacting protein 4 (class II) a.
      
 0.592
H3DGH0_TETNG
Cytochrome c oxidase assembly homolog 15 (yeast).
    
 0.414
Q4T9N8_TETNG
Chromosome undetermined SCAF7519, whole genome shotgun sequence; Belongs to the SKP1 family.
      
 0.412
H3CVG1_TETNG
LIM domain only 1.
      
 0.410
H3CTA5_TETNG
Hypoxia inducible factor 1 subunit alpha inhibitor.
      
 0.402
ADAMTS5
ADAM metallopeptidase with thrombospondin type 1 motif 5.
      
 0.400
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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