H3C0Y4_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

H3C0Y4_TETNG

DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family. (634 aa)

Predicted Functional Partners:

H3CAF5_TETNG

0.944

H3DL59_TETNG

0.860

H3DN49_TETNG

0.825

PES1

0.805

H3CSQ4_TETNG

0.771

H3CSM9_TETNG

0.768

H3D355_TETNG

0.755

Q4SNJ7_TETNG

0.754

FTSJ3

0.749

H3DFP4_TETNG

0.747

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FTSJ3	H3C0Y4_TETNG	ENSTNIP00000018621	ENSTNIP00000001900	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family.	0.749
FTSJ3	H3CSM9_TETNG	ENSTNIP00000018621	ENSTNIP00000011263	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Ribosomal protein L4.	0.898
FTSJ3	H3DFP4_TETNG	ENSTNIP00000018621	ENSTNIP00000019338	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.	0.912
FTSJ3	H3DL59_TETNG	ENSTNIP00000018621	ENSTNIP00000021257	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	EBNA1 binding protein 2.	0.997
FTSJ3	H3DN49_TETNG	ENSTNIP00000018621	ENSTNIP00000021947	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	NOP14 nucleolar protein homolog (yeast).	0.968
FTSJ3	PES1	ENSTNIP00000018621	ENSTNIP00000018983	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.992
FTSJ3	Q4SNJ7_TETNG	ENSTNIP00000018621	ENSTNIP00000010814	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.993
H3C0Y4_TETNG	FTSJ3	ENSTNIP00000001900	ENSTNIP00000018621	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.749
H3C0Y4_TETNG	H3CAF5_TETNG	ENSTNIP00000001900	ENSTNIP00000005227	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family.	RRM domain-containing protein.	0.944
H3C0Y4_TETNG	H3CSM9_TETNG	ENSTNIP00000001900	ENSTNIP00000011263	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family.	Ribosomal protein L4.	0.768
H3C0Y4_TETNG	H3CSQ4_TETNG	ENSTNIP00000001900	ENSTNIP00000011288	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family.	WD repeat domain 61.	0.771
H3C0Y4_TETNG	H3D355_TETNG	ENSTNIP00000001900	ENSTNIP00000014943	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family.	G protein-coupled receptor 153.	0.755
H3C0Y4_TETNG	H3DFP4_TETNG	ENSTNIP00000001900	ENSTNIP00000019338	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family.	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.	0.747
H3C0Y4_TETNG	H3DL59_TETNG	ENSTNIP00000001900	ENSTNIP00000021257	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family.	EBNA1 binding protein 2.	0.860
H3C0Y4_TETNG	H3DN49_TETNG	ENSTNIP00000001900	ENSTNIP00000021947	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family.	NOP14 nucleolar protein homolog (yeast).	0.825
H3C0Y4_TETNG	PES1	ENSTNIP00000001900	ENSTNIP00000018983	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.805
H3C0Y4_TETNG	Q4SNJ7_TETNG	ENSTNIP00000001900	ENSTNIP00000010814	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.754
H3CAF5_TETNG	H3C0Y4_TETNG	ENSTNIP00000005227	ENSTNIP00000001900	RRM domain-containing protein.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family.	0.944
H3CSM9_TETNG	FTSJ3	ENSTNIP00000011263	ENSTNIP00000018621	Ribosomal protein L4.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.898
H3CSM9_TETNG	H3C0Y4_TETNG	ENSTNIP00000011263	ENSTNIP00000001900	Ribosomal protein L4.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family.	0.768