Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3C0Z8_TETNGIg-like domain-containing protein. (121 aa)    
Predicted Functional Partners:
Q4SUX4_TETNG
Chromosome undetermined SCAF13836, whole genome shotgun sequence.
   
 
 0.464
H3C5R3_TETNG
Ig_4 domain-containing protein.
   
 
 0.460
H3CC28_TETNG
Ig-like domain-containing protein.
   
  0.458
H3C1L8_TETNG
T-cell receptor alpha/delta variable 22.0.
  
  
 
0.426
Q4RYI4_TETNG
Chromosome 2 SCAF14976, whole genome shotgun sequence.
   
 
 0.407
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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