H3C107_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

H3C107_TETNG

GTP binding protein overexpressed in skeletal muscle. (291 aa)

Predicted Functional Partners:

H3DFV8_TETNG

0.573

H3DK01_TETNG

0.573

H3C0G6_TETNG

0.508

H3DJW7_TETNG

0.508

H3CCC0_TETNG

0.492

FRMPD2

0.492

H3DMZ9_TETNG

0.489

H3CHC6_TETNG

0.473

H3DC25_TETNG

0.464

H3DJF3_TETNG

0.455

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FRMPD2	H3C107_TETNG	ENSTNIP00000019626	ENSTNIP00000001923	FERM and PDZ domain containing 2.	GTP binding protein overexpressed in skeletal muscle.	0.492
H3C0G6_TETNG	H3C107_TETNG	ENSTNIP00000001732	ENSTNIP00000001923	TSC complex subunit 2.	GTP binding protein overexpressed in skeletal muscle.	0.508
H3C0G6_TETNG	H3CHC6_TETNG	ENSTNIP00000001732	ENSTNIP00000007654	TSC complex subunit 2.	Neurofibromin 1b.	0.580
H3C0G6_TETNG	H3DJF3_TETNG	ENSTNIP00000001732	ENSTNIP00000020649	TSC complex subunit 2.	Regulatory associated protein of MTOR, complex 1.	0.923
H3C107_TETNG	FRMPD2	ENSTNIP00000001923	ENSTNIP00000019626	GTP binding protein overexpressed in skeletal muscle.	FERM and PDZ domain containing 2.	0.492
H3C107_TETNG	H3C0G6_TETNG	ENSTNIP00000001923	ENSTNIP00000001732	GTP binding protein overexpressed in skeletal muscle.	TSC complex subunit 2.	0.508
H3C107_TETNG	H3CCC0_TETNG	ENSTNIP00000001923	ENSTNIP00000005892	GTP binding protein overexpressed in skeletal muscle.	FERM and PDZ domain containing 2.	0.492
H3C107_TETNG	H3CHC6_TETNG	ENSTNIP00000001923	ENSTNIP00000007654	GTP binding protein overexpressed in skeletal muscle.	Neurofibromin 1b.	0.473
H3C107_TETNG	H3DC25_TETNG	ENSTNIP00000001923	ENSTNIP00000018068	GTP binding protein overexpressed in skeletal muscle.	Rho guanine nucleotide exchange factor (GEF) 3, like.	0.464
H3C107_TETNG	H3DFV8_TETNG	ENSTNIP00000001923	ENSTNIP00000019402	GTP binding protein overexpressed in skeletal muscle.	Intersectin 2a.	0.573
H3C107_TETNG	H3DJF3_TETNG	ENSTNIP00000001923	ENSTNIP00000020649	GTP binding protein overexpressed in skeletal muscle.	Regulatory associated protein of MTOR, complex 1.	0.455
H3C107_TETNG	H3DJW7_TETNG	ENSTNIP00000001923	ENSTNIP00000020813	GTP binding protein overexpressed in skeletal muscle.	Spermatogenesis associated 18.	0.508
H3C107_TETNG	H3DK01_TETNG	ENSTNIP00000001923	ENSTNIP00000020847	GTP binding protein overexpressed in skeletal muscle.	Uncharacterized protein.	0.573
H3C107_TETNG	H3DMZ9_TETNG	ENSTNIP00000001923	ENSTNIP00000021897	GTP binding protein overexpressed in skeletal muscle.	Tetraspanin.	0.489
H3CCC0_TETNG	H3C107_TETNG	ENSTNIP00000005892	ENSTNIP00000001923	FERM and PDZ domain containing 2.	GTP binding protein overexpressed in skeletal muscle.	0.492
H3CHC6_TETNG	H3C0G6_TETNG	ENSTNIP00000007654	ENSTNIP00000001732	Neurofibromin 1b.	TSC complex subunit 2.	0.580
H3CHC6_TETNG	H3C107_TETNG	ENSTNIP00000007654	ENSTNIP00000001923	Neurofibromin 1b.	GTP binding protein overexpressed in skeletal muscle.	0.473
H3DC25_TETNG	H3C107_TETNG	ENSTNIP00000018068	ENSTNIP00000001923	Rho guanine nucleotide exchange factor (GEF) 3, like.	GTP binding protein overexpressed in skeletal muscle.	0.464
H3DFV8_TETNG	H3C107_TETNG	ENSTNIP00000019402	ENSTNIP00000001923	Intersectin 2a.	GTP binding protein overexpressed in skeletal muscle.	0.573
H3DFV8_TETNG	H3DK01_TETNG	ENSTNIP00000019402	ENSTNIP00000020847	Intersectin 2a.	Uncharacterized protein.	0.857