Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
H3C115_TETNGPRP40 pre-mRNA processing factor 40 homolog A. (876 aa)    
Predicted Functional Partners:
H3CGE8_TETNG
RNA binding motif protein 25a.
   
 0.992
H3D3V0_TETNG
RNA binding motif protein 25b.
   
 0.992
H3C896_TETNG
Splicing factor 3a, subunit 1.
   
 0.987
H3D5F1_TETNG
U2 snRNP-associated SURP domain containing.
   
 
 0.962
H3CI21_TETNG
Uncharacterized protein.
   
 0.957
H3DKL8_TETNG
RNA binding motif protein 39b.
   
 0.957
H3DFD7_TETNG
HIV-1 Tat specific factor 1.
   
 
 0.956
H3DJM5_TETNG
DnaJ (Hsp40) homolog, subfamily C, member 8.
   
 
 0.955
H3D3X4_TETNG
Cell division cycle 40 homolog (S. cerevisiae).
     
 0.949
H3DF97_TETNG
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.947
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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