STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3C115_TETNGPRP40 pre-mRNA processing factor 40 homolog A. (876 aa)    
Predicted Functional Partners:
H3CGE8_TETNG
RNA binding motif protein 25a.
   
 0.909
H3D3V0_TETNG
RNA binding motif protein 25b.
   
 0.909
H3CTD1_TETNG
Cell division cycle and apoptosis regulator 1.
   
  0.901
H3D5F1_TETNG
U2 snRNP-associated SURP domain containing.
   
 
 0.850
H3CZE5_TETNG
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
   
  
 0.827
H3CGV3_TETNG
Splicing factor 1.
   
 0.811
H3C896_TETNG
Splicing factor 3a, subunit 1.
   
 
 0.761
H3DHN3_TETNG
Serine/arginine repetitive matrix 1.
   
 0.743
TCERG1
Transcription elongation regulator 1.
   
0.738
H3CJ19_TETNG
TPR_MLP1_2 domain-containing protein.
   
  0.738
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.