Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LYARLy1 antibody reactive. (383 aa)    
Predicted Functional Partners:
H3CHJ0_TETNG
Ribosomal RNA processing 1.
   
 
 0.905
H3CAN7_TETNG
Ribosome production factor 2 homolog.
   
   0.888
H3CF19_TETNG
NHP2 ribonucleoprotein homolog (yeast).
   
   0.869
H3DFY5_TETNG
PIN2 (TERF1) interacting telomerase inhibitor 1.
   
   0.846
H3CEG2_TETNG
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.842
H3DKE3_TETNG
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.840
H3DBE9_TETNG
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
   0.830
H3CRN2_TETNG
Glutamate-rich WD repeat containing 1.
   
  
 0.822
H3CHV0_TETNG
G patch domain containing 4.
   
 
 0.821
H3BX99_TETNG
TWIST neighbor.
   
    0.819
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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