Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
H3C129_TETNGFcf2 domain-containing protein. (236 aa)    
Predicted Functional Partners:
H3CMX4_TETNG
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 
 0.994
H3DBC9_TETNG
UTP3 small subunit processome component.
   
 
 0.991
H3CC45_TETNG
UTP6 small subunit processome component.
   
 
 0.990
H3DNR1_TETNG
Neuroguidin, EIF4E binding protein.
   
 
 0.990
Q4RLT9_TETNG
Chromosome 10 SCAF15019, whole genome shotgun sequence.
   
 
 0.989
H3DKN1_TETNG
WD repeat domain 46.
   
 
 0.988
Q4SKD1_TETNG
Chromosome 13 SCAF14566, whole genome shotgun sequence.
   
 
 0.985
UTP14C
UTP14C small subunit processome component.
   
 
 0.984
H3D5W5_TETNG
Ribosomal L1 domain containing 1.
   
 
 0.983
H3CZ22_TETNG
IMP U3 small nucleolar ribonucleoprotein 4.
   
 
 0.982
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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