Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
H3C191_TETNGZgc:113436. (417 aa)    
Predicted Functional Partners:
H3CQ87_TETNG
Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
    
  0.812
H3D9Q2_TETNG
CD74 molecule, major histocompatibility complex, class II invariant chain a.
    
  0.812
H3DJZ7_TETNG
EF-hand calcium binding domain 2.
   
 
 0.810
H3DI23_TETNG
PiggyBac transposable element derived 5.
   
 
 0.766
HARBI1
Harbinger transposase derived 1.
      
 0.729
lin52
Protein lin-52 homolog.
    
 0.693
H3D7K0_TETNG
Lin-54 DREAM MuvB core complex component.
    
 0.680
H3D3P4_TETNG
V(D)J recombination-activating protein 1; Catalytic component of the RAG complex, a multiprotein complex that mediates the DNA cleavage phase during V(D)J recombination. V(D)J recombination assembles a diverse repertoire of immunoglobulin and T-cell receptor genes in developing B and T- lymphocytes through rearrangement of different V (variable), in some cases D (diversity), and J (joining) gene segments. In the RAG complex, RAG1 mediates the DNA-binding to the conserved recombination signal sequences (RSS) and catalyzes the DNA cleavage activities by introducing a double-strand break [...]
      
 0.678
H3DIS1_TETNG
Uncharacterized protein.
    
 0.668
H3C4B5_TETNG
Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
   
   0.639
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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