H3C315_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H3C315_TETNG

TATA box binding protein. (306 aa)

Predicted Functional Partners:

H3CNC7_TETNG

0.962

H3CJG5_TETNG

0.959

H3D2H4_TETNG

0.959

H3D2K4_TETNG

0.959

H3D363_TETNG

0.959

H3CLV6_TETNG

0.958

H3CQF1_TETNG

0.958

H3DHH1_TETNG

0.958

H3CWE9_TETNG

0.957

H3D7F9_TETNG

0.957

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3C315_TETNG	H3CJG5_TETNG	ENSTNIP00000002633	ENSTNIP00000008394	TATA box binding protein.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.959
H3C315_TETNG	H3CLV6_TETNG	ENSTNIP00000002633	ENSTNIP00000009235	TATA box binding protein.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.958
H3C315_TETNG	H3CNC7_TETNG	ENSTNIP00000002633	ENSTNIP00000009758	TATA box binding protein.	General transcription factor IIB.	0.962
H3C315_TETNG	H3CQF1_TETNG	ENSTNIP00000002633	ENSTNIP00000010485	TATA box binding protein.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.958
H3C315_TETNG	H3CWE9_TETNG	ENSTNIP00000002633	ENSTNIP00000012583	TATA box binding protein.	General transcription factor IIA, 1.	0.957
H3C315_TETNG	H3D2H4_TETNG	ENSTNIP00000002633	ENSTNIP00000014712	TATA box binding protein.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.959
H3C315_TETNG	H3D2K4_TETNG	ENSTNIP00000002633	ENSTNIP00000014742	TATA box binding protein.	Transcription initiation factor TFIID subunit.	0.959
H3C315_TETNG	H3D363_TETNG	ENSTNIP00000002633	ENSTNIP00000014951	TATA box binding protein.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.959
H3C315_TETNG	H3D7F9_TETNG	ENSTNIP00000002633	ENSTNIP00000016450	TATA box binding protein.	Zgc:162472.	0.957
H3C315_TETNG	H3DHH1_TETNG	ENSTNIP00000002633	ENSTNIP00000019965	TATA box binding protein.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.958
H3CJG5_TETNG	H3C315_TETNG	ENSTNIP00000008394	ENSTNIP00000002633	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA box binding protein.	0.959
H3CJG5_TETNG	H3CLV6_TETNG	ENSTNIP00000008394	ENSTNIP00000009235	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.998
H3CJG5_TETNG	H3CNC7_TETNG	ENSTNIP00000008394	ENSTNIP00000009758	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	General transcription factor IIB.	0.987
H3CJG5_TETNG	H3CQF1_TETNG	ENSTNIP00000008394	ENSTNIP00000010485	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.998
H3CJG5_TETNG	H3CWE9_TETNG	ENSTNIP00000008394	ENSTNIP00000012583	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	General transcription factor IIA, 1.	0.982
H3CJG5_TETNG	H3D2H4_TETNG	ENSTNIP00000008394	ENSTNIP00000014712	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.998
H3CJG5_TETNG	H3D2K4_TETNG	ENSTNIP00000008394	ENSTNIP00000014742	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit.	0.998
H3CJG5_TETNG	H3D363_TETNG	ENSTNIP00000008394	ENSTNIP00000014951	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.998
H3CJG5_TETNG	H3DHH1_TETNG	ENSTNIP00000008394	ENSTNIP00000019965	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.998
H3CLV6_TETNG	H3C315_TETNG	ENSTNIP00000009235	ENSTNIP00000002633	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA box binding protein.	0.958