Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3C5M8_TETNGG patch domain containing 11. (262 aa)    
Predicted Functional Partners:
H3C0P7_TETNG
RNA binding motif protein 17.
   
 
 0.969
H3CVT4_TETNG
Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.
   
 0.950
H3CMJ1_TETNG
Small nuclear ribonucleoprotein polypeptide A.
   
 
 0.922
H3D557_TETNG
Small nuclear ribonucleoprotein polypeptide F.
   
 0.830
H3CWQ4_TETNG
Splicing factor 3a, subunit 3.
   
 
 0.792
H3CLD8_TETNG
Coiled-coil domain containing 130.
    
 
 0.757
H3DJE5_TETNG
Phosphodiesterase 12.
    
 0.748
lin52
Protein lin-52 homolog.
      
 0.727
H3D147_TETNG
Phosphatidylinositol glycan anchor biosynthesis, class Q.
      
 0.708
H3C123_TETNG
Serine/threonine kinase 19.
      
 0.686
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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