H3C5R3_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H3C5R3_TETNG

Ig_4 domain-containing protein. (171 aa)

Predicted Functional Partners:

Q4SUX4_TETNG

0.999

H3CM88_TETNG

0.996

H3BY08_TETNG

0.964

H3CNS0_TETNG

0.935

H3CXS7_TETNG

0.935

Q4SMW0_TETNG

0.857

H3D3T1_TETNG

0.857

H3DAW7_TETNG

0.857

H3DB77_TETNG

0.857

H3DI23_TETNG

0.857

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3BY08_TETNG	H3C5R3_TETNG	ENSTNIP00000000873	ENSTNIP00000003583	Ig-like domain-containing protein.	Ig_4 domain-containing protein.	0.964
H3BY08_TETNG	H3CM88_TETNG	ENSTNIP00000000873	ENSTNIP00000009369	Ig-like domain-containing protein.	Uncharacterized protein.	0.979
H3BY08_TETNG	H3CNS0_TETNG	ENSTNIP00000000873	ENSTNIP00000009903	Ig-like domain-containing protein.	Tyrosine-protein kinase.	0.453
H3BY08_TETNG	H3CXS7_TETNG	ENSTNIP00000000873	ENSTNIP00000013062	Ig-like domain-containing protein.	Tyrosine-protein kinase.	0.453
H3BY08_TETNG	H3D3T1_TETNG	ENSTNIP00000000873	ENSTNIP00000015169	Ig-like domain-containing protein.	Dehydrogenase/reductase (SDR family) member 3b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.503
H3BY08_TETNG	H3DAW7_TETNG	ENSTNIP00000000873	ENSTNIP00000017659	Ig-like domain-containing protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.503
H3BY08_TETNG	H3DB77_TETNG	ENSTNIP00000000873	ENSTNIP00000017769	Ig-like domain-containing protein.	Retinol dehydrogenase 20; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.503
H3BY08_TETNG	H3DI23_TETNG	ENSTNIP00000000873	ENSTNIP00000020167	Ig-like domain-containing protein.	PiggyBac transposable element derived 5.	0.503
H3BY08_TETNG	Q4SMW0_TETNG	ENSTNIP00000000873	ENSTNIP00000011008	Ig-like domain-containing protein.	Chromosome 6 SCAF14544, whole genome shotgun sequence; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.503
H3BY08_TETNG	Q4SUX4_TETNG	ENSTNIP00000000873	ENSTNIP00000009211	Ig-like domain-containing protein.	Chromosome undetermined SCAF13836, whole genome shotgun sequence.	0.939
H3C5R3_TETNG	H3BY08_TETNG	ENSTNIP00000003583	ENSTNIP00000000873	Ig_4 domain-containing protein.	Ig-like domain-containing protein.	0.964
H3C5R3_TETNG	H3CM88_TETNG	ENSTNIP00000003583	ENSTNIP00000009369	Ig_4 domain-containing protein.	Uncharacterized protein.	0.996
H3C5R3_TETNG	H3CNS0_TETNG	ENSTNIP00000003583	ENSTNIP00000009903	Ig_4 domain-containing protein.	Tyrosine-protein kinase.	0.935
H3C5R3_TETNG	H3CXS7_TETNG	ENSTNIP00000003583	ENSTNIP00000013062	Ig_4 domain-containing protein.	Tyrosine-protein kinase.	0.935
H3C5R3_TETNG	H3D3T1_TETNG	ENSTNIP00000003583	ENSTNIP00000015169	Ig_4 domain-containing protein.	Dehydrogenase/reductase (SDR family) member 3b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.857
H3C5R3_TETNG	H3DAW7_TETNG	ENSTNIP00000003583	ENSTNIP00000017659	Ig_4 domain-containing protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.857
H3C5R3_TETNG	H3DB77_TETNG	ENSTNIP00000003583	ENSTNIP00000017769	Ig_4 domain-containing protein.	Retinol dehydrogenase 20; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.857
H3C5R3_TETNG	H3DI23_TETNG	ENSTNIP00000003583	ENSTNIP00000020167	Ig_4 domain-containing protein.	PiggyBac transposable element derived 5.	0.857
H3C5R3_TETNG	Q4SMW0_TETNG	ENSTNIP00000003583	ENSTNIP00000011008	Ig_4 domain-containing protein.	Chromosome 6 SCAF14544, whole genome shotgun sequence; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.857
H3C5R3_TETNG	Q4SUX4_TETNG	ENSTNIP00000003583	ENSTNIP00000009211	Ig_4 domain-containing protein.	Chromosome undetermined SCAF13836, whole genome shotgun sequence.	0.999