CRFA5 protein (Tetraodon nigroviridis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CRFA5

Class I helical cytokine receptor member 5. (488 aa)

Predicted Functional Partners:

SOCS2

0.958

H3C7F4_TETNG

0.863

H3C7F5_TETNG

0.863

H3CZX7_TETNG

0.783

H3CRH0_TETNG

0.781

H3CH80_TETNG

0.718

H3C837_TETNG

0.709

H3CXH8_TETNG

0.709

H3DL74_TETNG

0.709

H3DMJ5_TETNG

0.709

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRFA5	H3C7F4_TETNG	ENSTNIP00000004151	ENSTNIP00000004175	Class I helical cytokine receptor member 5.	Uncharacterized protein.	0.863
CRFA5	H3C7F5_TETNG	ENSTNIP00000004151	ENSTNIP00000004176	Class I helical cytokine receptor member 5.	Somatolactin alpha.	0.863
CRFA5	H3C837_TETNG	ENSTNIP00000004151	ENSTNIP00000004409	Class I helical cytokine receptor member 5.	Tyrosine-protein kinase.	0.709
CRFA5	H3CH80_TETNG	ENSTNIP00000004151	ENSTNIP00000007608	Class I helical cytokine receptor member 5.	Tyrosine-protein kinase.	0.718
CRFA5	H3CRH0_TETNG	ENSTNIP00000004151	ENSTNIP00000010854	Class I helical cytokine receptor member 5.	Protein tyrosine phosphatase non-receptor type 6.	0.781
CRFA5	H3CXH8_TETNG	ENSTNIP00000004151	ENSTNIP00000012963	Class I helical cytokine receptor member 5.	Tyrosine-protein kinase.	0.709
CRFA5	H3CZX7_TETNG	ENSTNIP00000004151	ENSTNIP00000013813	Class I helical cytokine receptor member 5.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.783
CRFA5	H3DL74_TETNG	ENSTNIP00000004151	ENSTNIP00000021272	Class I helical cytokine receptor member 5.	Tyrosine-protein kinase.	0.709
CRFA5	H3DMJ5_TETNG	ENSTNIP00000004151	ENSTNIP00000021743	Class I helical cytokine receptor member 5.	Tyrosine kinase 2.	0.709
CRFA5	SOCS2	ENSTNIP00000004151	ENSTNIP00000008851	Class I helical cytokine receptor member 5.	Suppressor of cytokine signaling 2.	0.958
H3C7F4_TETNG	CRFA5	ENSTNIP00000004175	ENSTNIP00000004151	Uncharacterized protein.	Class I helical cytokine receptor member 5.	0.863
H3C7F4_TETNG	H3C7F5_TETNG	ENSTNIP00000004175	ENSTNIP00000004176	Uncharacterized protein.	Somatolactin alpha.	0.545
H3C7F4_TETNG	H3C837_TETNG	ENSTNIP00000004175	ENSTNIP00000004409	Uncharacterized protein.	Tyrosine-protein kinase.	0.446
H3C7F4_TETNG	H3CH80_TETNG	ENSTNIP00000004175	ENSTNIP00000007608	Uncharacterized protein.	Tyrosine-protein kinase.	0.446
H3C7F4_TETNG	H3CRH0_TETNG	ENSTNIP00000004175	ENSTNIP00000010854	Uncharacterized protein.	Protein tyrosine phosphatase non-receptor type 6.	0.432
H3C7F4_TETNG	H3CXH8_TETNG	ENSTNIP00000004175	ENSTNIP00000012963	Uncharacterized protein.	Tyrosine-protein kinase.	0.446
H3C7F4_TETNG	H3CZX7_TETNG	ENSTNIP00000004175	ENSTNIP00000013813	Uncharacterized protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.432
H3C7F4_TETNG	H3DL74_TETNG	ENSTNIP00000004175	ENSTNIP00000021272	Uncharacterized protein.	Tyrosine-protein kinase.	0.446
H3C7F4_TETNG	H3DMJ5_TETNG	ENSTNIP00000004175	ENSTNIP00000021743	Uncharacterized protein.	Tyrosine kinase 2.	0.446
H3C7F5_TETNG	CRFA5	ENSTNIP00000004176	ENSTNIP00000004151	Somatolactin alpha.	Class I helical cytokine receptor member 5.	0.863