STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q4TI50_TETNGChromosome undetermined SCAF2405, whole genome shotgun sequence; Belongs to the cullin family. (354 aa)    
Predicted Functional Partners:
H3CW04_TETNG
Damage-specific DNA binding protein 1.
   
 0.968
H3CHN5_TETNG
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.926
H3CVP3_TETNG
Cullin 4A; Belongs to the cullin family.
  
  
0.912
H3CZI9_TETNG
Denticleless E3 ubiquitin protein ligase homolog (Drosophila).
    
 0.895
H3CLX5_TETNG
Cullin-associated and neddylation-dissociated 1.
   
 0.885
H3DJP7_TETNG
Excision repair cross-complementation group 8.
    
 0.881
H3CXM1_TETNG
COP9 signalosome subunit 5.
    
 0.866
H3D7J9_TETNG
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
    
 0.850
H3CM44_TETNG
Damage-specific DNA binding protein 2.
    
 0.842
COPS6
COP9 signalosome subunit 6.
    
 0.842
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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