Q4THY3_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Q4THY3_TETNG

Chromosome undetermined SCAF2566, whole genome shotgun sequence. (142 aa)

Predicted Functional Partners:

H3C838_TETNG

0.992

H3C8H7_TETNG

0.992

H3D2X2_TETNG

0.992

H3CV18_TETNG

0.942

SLX1

0.919

H3C922_TETNG

0.916

H3CNM9_TETNG

0.913

H3DLI2_TETNG

0.907

H3DBG3_TETNG

0.897

H3DIS1_TETNG

0.894

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3C838_TETNG	H3C8H7_TETNG	ENSTNIP00000004410	ENSTNIP00000004549	ProRS-C_1 domain-containing protein.	Uncharacterized protein.	0.999
H3C838_TETNG	H3C922_TETNG	ENSTNIP00000004410	ENSTNIP00000004744	ProRS-C_1 domain-containing protein.	OB domain-containing protein.	0.992
H3C838_TETNG	H3CNM9_TETNG	ENSTNIP00000004410	ENSTNIP00000009861	ProRS-C_1 domain-containing protein.	Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.999
H3C838_TETNG	H3CV18_TETNG	ENSTNIP00000004410	ENSTNIP00000012102	ProRS-C_1 domain-containing protein.	Tyrosine--tRNA ligase.	0.999
H3C838_TETNG	H3D2X2_TETNG	ENSTNIP00000004410	ENSTNIP00000014860	ProRS-C_1 domain-containing protein.	Glutamyl-prolyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.999
H3C838_TETNG	H3DBG3_TETNG	ENSTNIP00000004410	ENSTNIP00000017855	ProRS-C_1 domain-containing protein.	Isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.999
H3C838_TETNG	H3DLI2_TETNG	ENSTNIP00000004410	ENSTNIP00000021380	ProRS-C_1 domain-containing protein.	Leucyl-tRNA synthetase b.	0.999
H3C838_TETNG	Q4THY3_TETNG	ENSTNIP00000004410	ENSTNIP00000004263	ProRS-C_1 domain-containing protein.	Chromosome undetermined SCAF2566, whole genome shotgun sequence.	0.992
H3C8H7_TETNG	H3C838_TETNG	ENSTNIP00000004549	ENSTNIP00000004410	Uncharacterized protein.	ProRS-C_1 domain-containing protein.	0.999
H3C8H7_TETNG	H3C922_TETNG	ENSTNIP00000004549	ENSTNIP00000004744	Uncharacterized protein.	OB domain-containing protein.	0.992
H3C8H7_TETNG	H3CNM9_TETNG	ENSTNIP00000004549	ENSTNIP00000009861	Uncharacterized protein.	Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.999
H3C8H7_TETNG	H3CV18_TETNG	ENSTNIP00000004549	ENSTNIP00000012102	Uncharacterized protein.	Tyrosine--tRNA ligase.	0.999
H3C8H7_TETNG	H3D2X2_TETNG	ENSTNIP00000004549	ENSTNIP00000014860	Uncharacterized protein.	Glutamyl-prolyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.996
H3C8H7_TETNG	H3DBG3_TETNG	ENSTNIP00000004549	ENSTNIP00000017855	Uncharacterized protein.	Isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.999
H3C8H7_TETNG	H3DLI2_TETNG	ENSTNIP00000004549	ENSTNIP00000021380	Uncharacterized protein.	Leucyl-tRNA synthetase b.	0.999
H3C8H7_TETNG	Q4THY3_TETNG	ENSTNIP00000004549	ENSTNIP00000004263	Uncharacterized protein.	Chromosome undetermined SCAF2566, whole genome shotgun sequence.	0.992
H3C922_TETNG	H3C838_TETNG	ENSTNIP00000004744	ENSTNIP00000004410	OB domain-containing protein.	ProRS-C_1 domain-containing protein.	0.992
H3C922_TETNG	H3C8H7_TETNG	ENSTNIP00000004744	ENSTNIP00000004549	OB domain-containing protein.	Uncharacterized protein.	0.992
H3C922_TETNG	H3CNM9_TETNG	ENSTNIP00000004744	ENSTNIP00000009861	OB domain-containing protein.	Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.913
H3C922_TETNG	H3CV18_TETNG	ENSTNIP00000004744	ENSTNIP00000012102	OB domain-containing protein.	Tyrosine--tRNA ligase.	0.942