H3C868_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

H3C868_TETNG

Si:zfos-452g4.1. (353 aa)

Predicted Functional Partners:

H3CM80_TETNG

0.903

Q4RKH0_TETNG

0.899

Q4S0Z5_TETNG

0.888

H3CQP1_TETNG

0.851

H3CNR0_TETNG

0.836

Q4T2T1_TETNG

0.778

ENY2

0.778

Q4SXZ3_TETNG

0.770

H3C4H6_TETNG

0.767

H3DHC1_TETNG

0.767

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENY2	H3C4H6_TETNG	ENSTNIP00000009681	ENSTNIP00000003145	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	TAP-C domain-containing protein.	0.775
ENY2	H3C868_TETNG	ENSTNIP00000009681	ENSTNIP00000004440	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	Si:zfos-452g4.1.	0.778
ENY2	H3CM80_TETNG	ENSTNIP00000009681	ENSTNIP00000009361	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	PCI domain containing 2.	0.946
ENY2	H3CNR0_TETNG	ENSTNIP00000009681	ENSTNIP00000009893	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	Ribonucleic acid export 1.	0.467
ENY2	H3DHC1_TETNG	ENSTNIP00000009681	ENSTNIP00000019915	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	NTF2 domain-containing protein.	0.775
ENY2	Q4RKH0_TETNG	ENSTNIP00000009681	ENSTNIP00000020914	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	Chromosome 21 SCAF15029, whole genome shotgun sequence.	0.912
H3C4H6_TETNG	ENY2	ENSTNIP00000003145	ENSTNIP00000009681	TAP-C domain-containing protein.	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	0.775
H3C4H6_TETNG	H3C868_TETNG	ENSTNIP00000003145	ENSTNIP00000004440	TAP-C domain-containing protein.	Si:zfos-452g4.1.	0.767
H3C4H6_TETNG	H3CM80_TETNG	ENSTNIP00000003145	ENSTNIP00000009361	TAP-C domain-containing protein.	PCI domain containing 2.	0.793
H3C4H6_TETNG	H3CNR0_TETNG	ENSTNIP00000003145	ENSTNIP00000009893	TAP-C domain-containing protein.	Ribonucleic acid export 1.	0.965
H3C4H6_TETNG	H3DHC1_TETNG	ENSTNIP00000003145	ENSTNIP00000019915	TAP-C domain-containing protein.	NTF2 domain-containing protein.	0.899
H3C4H6_TETNG	Q4RKH0_TETNG	ENSTNIP00000003145	ENSTNIP00000020914	TAP-C domain-containing protein.	Chromosome 21 SCAF15029, whole genome shotgun sequence.	0.570
H3C4H6_TETNG	Q4SXZ3_TETNG	ENSTNIP00000003145	ENSTNIP00000008507	TAP-C domain-containing protein.	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast).	0.894
H3C4H6_TETNG	Q4T2T1_TETNG	ENSTNIP00000003145	ENSTNIP00000007338	TAP-C domain-containing protein.	Chromosome undetermined SCAF10190, whole genome shotgun sequence.	0.775
H3C868_TETNG	ENY2	ENSTNIP00000004440	ENSTNIP00000009681	Si:zfos-452g4.1.	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	0.778
H3C868_TETNG	H3C4H6_TETNG	ENSTNIP00000004440	ENSTNIP00000003145	Si:zfos-452g4.1.	TAP-C domain-containing protein.	0.767
H3C868_TETNG	H3CM80_TETNG	ENSTNIP00000004440	ENSTNIP00000009361	Si:zfos-452g4.1.	PCI domain containing 2.	0.903
H3C868_TETNG	H3CNR0_TETNG	ENSTNIP00000004440	ENSTNIP00000009893	Si:zfos-452g4.1.	Ribonucleic acid export 1.	0.836
H3C868_TETNG	H3CQP1_TETNG	ENSTNIP00000004440	ENSTNIP00000010575	Si:zfos-452g4.1.	Transmembrane protein 160.	0.851
H3C868_TETNG	H3DHC1_TETNG	ENSTNIP00000004440	ENSTNIP00000019915	Si:zfos-452g4.1.	NTF2 domain-containing protein.	0.767