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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3C8A0_TETNGCPSF_A domain-containing protein. (46 aa)    
Predicted Functional Partners:
H3BZJ7_TETNG
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.963
H3DR39_TETNG
Splicing factor 3b, subunit 1.
   
 0.962
H3C896_TETNG
Splicing factor 3a, subunit 1.
   
 0.961
H3CPR4_TETNG
Splicing factor 3b, subunit 2.
   
 0.960
H3CUT3_TETNG
Splicing factor 3b, subunit 4.
   
 0.960
Q4SGV0_TETNG
Chromosome 14 SCAF14590, whole genome shotgun sequence.
    
 0.958
H3CFC6_TETNG
Small nuclear ribonucleoprotein 200 (U5).
   
 
 0.957
H3CCS4_TETNG
Pre-mRNA processing factor 8.
   
 
 0.953
Q4SQY6_TETNG
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.952
H3D557_TETNG
Small nuclear ribonucleoprotein polypeptide F.
   
 0.952
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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