Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
H3C8A0_TETNGCPSF_A domain-containing protein. (46 aa)    
Predicted Functional Partners:
H3DR39_TETNG
Splicing factor 3b, subunit 1.
   
 0.977
H3CPR4_TETNG
Splicing factor 3b, subunit 2.
   
 0.974
DHX15
DEAH-box helicase 15.
   
 0.973
H3CFC6_TETNG
Small nuclear ribonucleoprotein 200 (U5).
   
 
 0.971
H3CUT3_TETNG
Splicing factor 3b, subunit 4.
   
 0.971
H3BZJ7_TETNG
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.969
H3CCS4_TETNG
Pre-mRNA processing factor 8.
   
 
 0.969
H3CIF0_TETNG
Elongation factor Tu GTP binding domain containing 2.
   
 
 0.964
H3CWQ4_TETNG
Splicing factor 3a, subunit 3.
   
 0.963
H3C896_TETNG
Splicing factor 3a, subunit 1.
   
 0.962
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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