Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3C8R3_TETNGHeterogeneous nuclear ribonucleoprotein Ub. (757 aa)    
Predicted Functional Partners:
H3BZN4_TETNG
Heterogeneous nuclear ribonucleoprotein K.
   
 0.913
H3CQ29_TETNG
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.913
H3CXP9_TETNG
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.902
H3BZ85_TETNG
Serine and arginine rich splicing factor 9.
   
 0.867
HNRNPLL
Heterogeneous nuclear ribonucleoprotein L like.
   
 0.845
H3C1F2_TETNG
Heterogeneous nuclear ribonucleoprotein L.
   
 0.842
H3DEJ6_TETNG
EWS RNA-binding protein 1b.
   
 0.842
HNRNPH3
Heterogeneous nuclear ribonucleoprotein H3.
   
 0.841
H3DDK8_TETNG
Heterogeneous nuclear ribonucleoprotein M.
   
 0.836
H3D7K3_TETNG
Heterogeneous nuclear ribonucleoprotein D.
   
 0.826
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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