H3CA34_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H3CA34_TETNG

High density lipoprotein binding protein b. (1276 aa)

Predicted Functional Partners:

Q4SDS8_TETNG

0.697

H3CLP6_TETNG

0.636

H3CK57_TETNG

0.571

H3CHP8_TETNG

0.551

EIF6

0.478

WDR31

0.468

H3C838_TETNG

0.462

H3C8H7_TETNG

0.462

H3D2X2_TETNG

0.462

H3CNR7_TETNG

0.449

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF6	H3C838_TETNG	ENSTNIP00000005401	ENSTNIP00000004410	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	ProRS-C_1 domain-containing protein.	0.771
EIF6	H3C8H7_TETNG	ENSTNIP00000005401	ENSTNIP00000004549	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Uncharacterized protein.	0.771
EIF6	H3CA34_TETNG	ENSTNIP00000005401	ENSTNIP00000005106	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	High density lipoprotein binding protein b.	0.478
EIF6	H3CK57_TETNG	ENSTNIP00000005401	ENSTNIP00000008636	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Eukaryotic translation elongation factor 1 gamma.	0.564
EIF6	H3D2X2_TETNG	ENSTNIP00000005401	ENSTNIP00000014860	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Glutamyl-prolyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.771
EIF6	Q4SDS8_TETNG	ENSTNIP00000005401	ENSTNIP00000013420	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Chromosome 1 SCAF14632, whole genome shotgun sequence.	0.706
EIF6	WDR31	ENSTNIP00000005401	ENSTNIP00000018890	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	WD repeat domain 31.	0.630
H3C838_TETNG	EIF6	ENSTNIP00000004410	ENSTNIP00000005401	ProRS-C_1 domain-containing protein.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	0.771
H3C838_TETNG	H3C8H7_TETNG	ENSTNIP00000004410	ENSTNIP00000004549	ProRS-C_1 domain-containing protein.	Uncharacterized protein.	0.999
H3C838_TETNG	H3CA34_TETNG	ENSTNIP00000004410	ENSTNIP00000005106	ProRS-C_1 domain-containing protein.	High density lipoprotein binding protein b.	0.462
H3C838_TETNG	H3CK57_TETNG	ENSTNIP00000004410	ENSTNIP00000008636	ProRS-C_1 domain-containing protein.	Eukaryotic translation elongation factor 1 gamma.	0.996
H3C838_TETNG	H3CNR7_TETNG	ENSTNIP00000004410	ENSTNIP00000009900	ProRS-C_1 domain-containing protein.	Plug_translocon domain-containing protein.	0.806
H3C838_TETNG	H3D2X2_TETNG	ENSTNIP00000004410	ENSTNIP00000014860	ProRS-C_1 domain-containing protein.	Glutamyl-prolyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.999
H3C838_TETNG	Q4SDS8_TETNG	ENSTNIP00000004410	ENSTNIP00000013420	ProRS-C_1 domain-containing protein.	Chromosome 1 SCAF14632, whole genome shotgun sequence.	0.804
H3C838_TETNG	WDR31	ENSTNIP00000004410	ENSTNIP00000018890	ProRS-C_1 domain-containing protein.	WD repeat domain 31.	0.804
H3C8H7_TETNG	EIF6	ENSTNIP00000004549	ENSTNIP00000005401	Uncharacterized protein.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	0.771
H3C8H7_TETNG	H3C838_TETNG	ENSTNIP00000004549	ENSTNIP00000004410	Uncharacterized protein.	ProRS-C_1 domain-containing protein.	0.999
H3C8H7_TETNG	H3CA34_TETNG	ENSTNIP00000004549	ENSTNIP00000005106	Uncharacterized protein.	High density lipoprotein binding protein b.	0.462
H3C8H7_TETNG	H3CK57_TETNG	ENSTNIP00000004549	ENSTNIP00000008636	Uncharacterized protein.	Eukaryotic translation elongation factor 1 gamma.	0.996
H3C8H7_TETNG	H3CNR7_TETNG	ENSTNIP00000004549	ENSTNIP00000009900	Uncharacterized protein.	Plug_translocon domain-containing protein.	0.806