STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3CA63_TETNGCyclin-dependent kinase 2 interacting protein. (211 aa)    
Predicted Functional Partners:
H3CVV4_TETNG
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.998
H3DFJ2_TETNG
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.977
H3CQT9_TETNG
Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).
   
 0.976
H3D6H4_TETNG
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]
   
 0.969
H3CDG6_TETNG
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.968
H3DPW0_TETNG
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.963
H3D0S7_TETNG
Transcription elongation factor SPT5.
    
 0.944
H3DFF4_TETNG
Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.
   
 0.944
Q4SK90_TETNG
Chromosome 13 SCAF14566, whole genome shotgun sequence.
  
 0.920
Q4SLF5_TETNG
Chromosome 7 SCAF14557, whole genome shotgun sequence.
   
 0.916
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.