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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3CA73_TETNGAT rich interactive domain 4A (RBP1-like). (1203 aa)    
Predicted Functional Partners:
RBBP7
Chromosome undetermined SCAF7762, whole genome shotgun sequence.
   
 0.989
H3D614_TETNG
WD_REPEATS_REGION domain-containing protein.
   
 0.989
H3DJC1_TETNG
Retinoblastoma binding protein 4.
   
 0.989
H3DDM5_TETNG
Actin-like 6A; Belongs to the actin family.
   
 0.986
H3CQB1_TETNG
Sap30-like.
    
 0.980
H3DDU9_TETNG
SDS3 homolog, SIN3A corepressor complex component.
   
 0.979
H3CWF4_TETNG
BRMS1 like transcriptional repressor b.
   
 0.971
H3D653_TETNG
BRMS1 transcriptional repressor and anoikis regulator.
   
 0.971
H3DHJ4_TETNG
Uncharacterized protein.
   
 0.971
HDAC2
Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
   
 0.969
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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