H3CAR8_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

H3CAR8_TETNG

Mitochondrial inner membrane protease subunit. (175 aa)

Predicted Functional Partners:

H3BXQ7_TETNG

0.863

Q4SRD1_TETNG

0.852

H3D612_TETNG

0.785

H3DB47_TETNG

0.743

H3D7E2_TETNG

0.725

H3CVJ8_TETNG

0.705

H3CIC3_TETNG

0.686

H3DJF3_TETNG

0.656

SLITRK1

0.628

H3DR02_TETNG

0.618

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3BXQ7_TETNG	H3CAR8_TETNG	ENSTNIP00000000770	ENSTNIP00000005340	Signal peptidase complex subunit 2.	Mitochondrial inner membrane protease subunit.	0.863
H3BXQ7_TETNG	H3DR02_TETNG	ENSTNIP00000000770	ENSTNIP00000022951	Signal peptidase complex subunit 2.	Integrin alpha FG-GAP repeat containing 2.	0.715
H3BXQ7_TETNG	Q4SRD1_TETNG	ENSTNIP00000000770	ENSTNIP00000010069	Signal peptidase complex subunit 2.	Chromosome 11 SCAF14528, whole genome shotgun sequence.	0.999
H3CAR8_TETNG	H3BXQ7_TETNG	ENSTNIP00000005340	ENSTNIP00000000770	Mitochondrial inner membrane protease subunit.	Signal peptidase complex subunit 2.	0.863
H3CAR8_TETNG	H3CIC3_TETNG	ENSTNIP00000005340	ENSTNIP00000008001	Mitochondrial inner membrane protease subunit.	BTB (POZ) domain containing 9.	0.686
H3CAR8_TETNG	H3CVJ8_TETNG	ENSTNIP00000005340	ENSTNIP00000012282	Mitochondrial inner membrane protease subunit.	SPG7 matrix AAA peptidase subunit, paraplegin.	0.705
H3CAR8_TETNG	H3D612_TETNG	ENSTNIP00000005340	ENSTNIP00000015952	Mitochondrial inner membrane protease subunit.	NADH:ubiquinone oxidoreductase complex assembly factor 6.	0.785
H3CAR8_TETNG	H3D7E2_TETNG	ENSTNIP00000005340	ENSTNIP00000016433	Mitochondrial inner membrane protease subunit.	G elongation factor, mitochondrial 2.	0.725
H3CAR8_TETNG	H3DB47_TETNG	ENSTNIP00000005340	ENSTNIP00000017739	Mitochondrial inner membrane protease subunit.	Kelch repeat and BTB (POZ) domain containing 12.	0.743
H3CAR8_TETNG	H3DJF3_TETNG	ENSTNIP00000005340	ENSTNIP00000020649	Mitochondrial inner membrane protease subunit.	Regulatory associated protein of MTOR, complex 1.	0.656
H3CAR8_TETNG	H3DR02_TETNG	ENSTNIP00000005340	ENSTNIP00000022951	Mitochondrial inner membrane protease subunit.	Integrin alpha FG-GAP repeat containing 2.	0.618
H3CAR8_TETNG	Q4SRD1_TETNG	ENSTNIP00000005340	ENSTNIP00000010069	Mitochondrial inner membrane protease subunit.	Chromosome 11 SCAF14528, whole genome shotgun sequence.	0.852
H3CAR8_TETNG	SLITRK1	ENSTNIP00000005340	ENSTNIP00000002971	Mitochondrial inner membrane protease subunit.	SLIT and NTRK like family member 1.	0.628
H3CIC3_TETNG	H3CAR8_TETNG	ENSTNIP00000008001	ENSTNIP00000005340	BTB (POZ) domain containing 9.	Mitochondrial inner membrane protease subunit.	0.686
H3CVJ8_TETNG	H3CAR8_TETNG	ENSTNIP00000012282	ENSTNIP00000005340	SPG7 matrix AAA peptidase subunit, paraplegin.	Mitochondrial inner membrane protease subunit.	0.705
H3D612_TETNG	H3CAR8_TETNG	ENSTNIP00000015952	ENSTNIP00000005340	NADH:ubiquinone oxidoreductase complex assembly factor 6.	Mitochondrial inner membrane protease subunit.	0.785
H3D7E2_TETNG	H3CAR8_TETNG	ENSTNIP00000016433	ENSTNIP00000005340	G elongation factor, mitochondrial 2.	Mitochondrial inner membrane protease subunit.	0.725
H3DB47_TETNG	H3CAR8_TETNG	ENSTNIP00000017739	ENSTNIP00000005340	Kelch repeat and BTB (POZ) domain containing 12.	Mitochondrial inner membrane protease subunit.	0.743
H3DJF3_TETNG	H3CAR8_TETNG	ENSTNIP00000020649	ENSTNIP00000005340	Regulatory associated protein of MTOR, complex 1.	Mitochondrial inner membrane protease subunit.	0.656
H3DJF3_TETNG	H3DR02_TETNG	ENSTNIP00000020649	ENSTNIP00000022951	Regulatory associated protein of MTOR, complex 1.	Integrin alpha FG-GAP repeat containing 2.	0.543