Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
H3CAU2_TETNGSMG7 nonsense mediated mRNA decay factor. (1154 aa)    
Predicted Functional Partners:
H3CY72_TETNG
SMG5 nonsense mediated mRNA decay factor.
   
0.998
H3D9K9_TETNG
FATC domain-containing protein.
   
 0.997
UPF1
UPF1 RNA helicase and ATPase.
   
 0.988
H3D0H5_TETNG
Uncharacterized protein.
   
 0.988
H3DFG1_TETNG
SMG6 nonsense mediated mRNA decay factor.
    
0.987
Q4SSY8_TETNG
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.981
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.971
H3DE96_TETNG
UPF3B regulator of nonsense mediated mRNA decay.
   
 0.954
H3CZY0_TETNG
Mechanistic target of rapamycin kinase; Belongs to the PI3/PI4-kinase family.
   
 0.938
H3CJ69_TETNG
SMG9 nonsense mediated mRNA decay factor.
   
 
 0.936
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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