Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3CAY1_TETNGDynein light chain roadblock. (96 aa)    
Predicted Functional Partners:
H3CJY9_TETNG
WD repeat domain 60.
    
 0.952
H3D3Q2_TETNG
Tctex1 domain containing 2.
  
 0.950
H3CPU9_TETNG
Dynein, cytoplasmic 2, light intermediate chain 1.
    
 0.939
H3CBU1_TETNG
WD repeat domain 34.
    
 0.928
H3DR71_TETNG
WD_REPEATS_REGION domain-containing protein.
    
 0.928
DYNLT3
Chromosome 2 SCAF14781, whole genome shotgun sequence.
  
 0.925
DYNC1I1
WD_REPEATS_REGION domain-containing protein.
   
 0.922
Q4S6Y1_TETNG
Chromosome 14 SCAF14723, whole genome shotgun sequence.
  
 0.918
H3C3F0_TETNG
NME/NM23 family member 8; Belongs to the NDK family.
   
 
 0.914
H3CNA9_TETNG
Tctex1 domain containing 1.
   
 0.914
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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