H3CB15_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

H3CB15_TETNG

Myelin regulatory factor like. (912 aa)

Predicted Functional Partners:

H3D4Z8_TETNG

0.879

H3CJL9_TETNG

0.699

ICK

0.699

MOK

0.699

H3CQS7_TETNG

0.520

H3D5W7_TETNG

0.498

H3DBX0_TETNG

0.498

H3DB28_TETNG

0.458

H3DBV1_TETNG

0.433

H3DQ41_TETNG

0.432

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3CB15_TETNG	H3CJL9_TETNG	ENSTNIP00000005437	ENSTNIP00000008448	Myelin regulatory factor like.	Male germ cell-associated kinase.	0.699
H3CB15_TETNG	H3CQS7_TETNG	ENSTNIP00000005437	ENSTNIP00000010611	Myelin regulatory factor like.	Fatty acid 2-hydroxylase; Catalyzes stereospecific hydroxylation of free fatty acids at the C-2 position to produce (R)-2-hydroxy fatty acids, which are building blocks of sphingolipids and glycosphingolipids common in neural tissue and epidermis. Plays an essential role in the synthesis of galactosphingolipids of the myelin sheath. Responsible for the synthesis of sphingolipids and glycosphingolipids involved in the formation of epidermal lamellar bodies critical for skin permeability barrier. Participates in the synthesis of glycosphingolipids and a fraction of type II wax diesters i [...]	0.520
H3CB15_TETNG	H3D4Z8_TETNG	ENSTNIP00000005437	ENSTNIP00000015587	Myelin regulatory factor like.	SPO11 initiator of meiotic double stranded breaks.	0.879
H3CB15_TETNG	H3D5W7_TETNG	ENSTNIP00000005437	ENSTNIP00000015907	Myelin regulatory factor like.	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	0.498
H3CB15_TETNG	H3DB28_TETNG	ENSTNIP00000005437	ENSTNIP00000017720	Myelin regulatory factor like.	Ring finger protein 34a.	0.458
H3CB15_TETNG	H3DBV1_TETNG	ENSTNIP00000005437	ENSTNIP00000017994	Myelin regulatory factor like.	Transmembrane protein 98.	0.433
H3CB15_TETNG	H3DBX0_TETNG	ENSTNIP00000005437	ENSTNIP00000018013	Myelin regulatory factor like.	RAD51 paralog C.	0.498
H3CB15_TETNG	H3DQ41_TETNG	ENSTNIP00000005437	ENSTNIP00000022640	Myelin regulatory factor like.	ATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family.	0.432
H3CB15_TETNG	ICK	ENSTNIP00000005437	ENSTNIP00000019658	Myelin regulatory factor like.	Intestinal cell kinase.	0.699
H3CB15_TETNG	MOK	ENSTNIP00000005437	ENSTNIP00000020389	Myelin regulatory factor like.	MOK protein kinase; Belongs to the protein kinase superfamily.	0.699
H3CJL9_TETNG	H3CB15_TETNG	ENSTNIP00000008448	ENSTNIP00000005437	Male germ cell-associated kinase.	Myelin regulatory factor like.	0.699
H3CQS7_TETNG	H3CB15_TETNG	ENSTNIP00000010611	ENSTNIP00000005437	Fatty acid 2-hydroxylase; Catalyzes stereospecific hydroxylation of free fatty acids at the C-2 position to produce (R)-2-hydroxy fatty acids, which are building blocks of sphingolipids and glycosphingolipids common in neural tissue and epidermis. Plays an essential role in the synthesis of galactosphingolipids of the myelin sheath. Responsible for the synthesis of sphingolipids and glycosphingolipids involved in the formation of epidermal lamellar bodies critical for skin permeability barrier. Participates in the synthesis of glycosphingolipids and a fraction of type II wax diesters i [...]	Myelin regulatory factor like.	0.520
H3D4Z8_TETNG	H3CB15_TETNG	ENSTNIP00000015587	ENSTNIP00000005437	SPO11 initiator of meiotic double stranded breaks.	Myelin regulatory factor like.	0.879
H3D4Z8_TETNG	H3D5W7_TETNG	ENSTNIP00000015587	ENSTNIP00000015907	SPO11 initiator of meiotic double stranded breaks.	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	0.976
H3D4Z8_TETNG	H3DBX0_TETNG	ENSTNIP00000015587	ENSTNIP00000018013	SPO11 initiator of meiotic double stranded breaks.	RAD51 paralog C.	0.870
H3D4Z8_TETNG	H3DQ41_TETNG	ENSTNIP00000015587	ENSTNIP00000022640	SPO11 initiator of meiotic double stranded breaks.	ATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family.	0.685
H3D5W7_TETNG	H3CB15_TETNG	ENSTNIP00000015907	ENSTNIP00000005437	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	Myelin regulatory factor like.	0.498
H3D5W7_TETNG	H3D4Z8_TETNG	ENSTNIP00000015907	ENSTNIP00000015587	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	SPO11 initiator of meiotic double stranded breaks.	0.976
H3D5W7_TETNG	H3DBX0_TETNG	ENSTNIP00000015907	ENSTNIP00000018013	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	RAD51 paralog C.	0.460
H3D5W7_TETNG	H3DQ41_TETNG	ENSTNIP00000015907	ENSTNIP00000022640	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	ATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family.	0.832