STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBBP7Chromosome undetermined SCAF7762, whole genome shotgun sequence. (422 aa)    
Predicted Functional Partners:
H3DM97_TETNG
Lin-37 DREAM MuvB core complex component.
    
 0.996
H3CA73_TETNG
AT rich interactive domain 4A (RBP1-like).
   
 0.989
H3DGW8_TETNG
Translocase of outer mitochondrial membrane 20.
   
 0.989
lin52
Protein lin-52 homolog.
   
 0.987
H3DHR2_TETNG
Histone acetyltransferase type B catalytic subunit; Acetylates soluble but not nucleosomal histone H4 at 'Lys-5' (H4K5ac) and 'Lys-12' (H4K12ac) and, to a lesser extent, acetylates histone H2A at 'Lys-5' (H2AK5ac). Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG.
   
 0.976
H3C730_TETNG
Embryonic ectoderm development.
   
 0.973
H3DG38_TETNG
Lin-9 DREAM MuvB core complex component.
    
 0.954
H3DK21_TETNG
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.953
H3CC44_TETNG
SUZ12 polycomb repressive complex 2 subunit b.
    
 0.935
H3D135_TETNG
VEFS-Box domain-containing protein.
    
 0.935
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.